miRNA display CGI


Results 21 - 35 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33613 3' -55.2 NC_007605.1 + 12431 0.68 0.886415
Target:  5'- -cGGUcGGCuGGGCugGCcgagcccggguCUGGGAGGu -3'
miRNA:   3'- gaCCAaUUG-CCCGugCGu----------GACCCUCU- -5'
33613 3' -55.2 NC_007605.1 + 169211 0.68 0.872234
Target:  5'- -aGGc--GCgGGGCGCGCAacgUUGGGAGGu -3'
miRNA:   3'- gaCCaauUG-CCCGUGCGU---GACCCUCU- -5'
33613 3' -55.2 NC_007605.1 + 153901 0.68 0.857193
Target:  5'- -gGGUUGAgGGGCGCccagGCGuCcgGGGAGGg -3'
miRNA:   3'- gaCCAAUUgCCCGUG----CGU-Ga-CCCUCU- -5'
33613 3' -55.2 NC_007605.1 + 33914 0.68 0.857193
Target:  5'- -cGGUcGGCuGGGCugGCcggcccggguCUGGGAGGu -3'
miRNA:   3'- gaCCAaUUG-CCCGugCGu---------GACCCUCU- -5'
33613 3' -55.2 NC_007605.1 + 20260 0.69 0.807417
Target:  5'- -aGGU--ACGGGCugGUgggcucccuCUGGGAGGu -3'
miRNA:   3'- gaCCAauUGCCCGugCGu--------GACCCUCU- -5'
33613 3' -55.2 NC_007605.1 + 86395 0.7 0.761514
Target:  5'- -cGGggAACGGGCG-GCAcCUGaGGAGGu -3'
miRNA:   3'- gaCCaaUUGCCCGUgCGU-GAC-CCUCU- -5'
33613 3' -55.2 NC_007605.1 + 163540 0.71 0.751954
Target:  5'- aCUGGcggAGCugGGGCACGCccuCUGGGAa- -3'
miRNA:   3'- -GACCaa-UUG--CCCGUGCGu--GACCCUcu -5'
33613 3' -55.2 NC_007605.1 + 71999 0.71 0.742288
Target:  5'- uCUGGa-GGCGGGCACGCugauGGAGAa -3'
miRNA:   3'- -GACCaaUUGCCCGUGCGugacCCUCU- -5'
33613 3' -55.2 NC_007605.1 + 53098 0.71 0.732526
Target:  5'- -gGGUUAAgGGGguCGCA--GGGAGAc -3'
miRNA:   3'- gaCCAAUUgCCCguGCGUgaCCCUCU- -5'
33613 3' -55.2 NC_007605.1 + 151015 0.71 0.722678
Target:  5'- -cGGggGGCGGGCcCGCAUaGGGAa- -3'
miRNA:   3'- gaCCaaUUGCCCGuGCGUGaCCCUcu -5'
33613 3' -55.2 NC_007605.1 + 128058 0.72 0.662272
Target:  5'- -gGGUUAACGGGUggaaGCA-UGGGGGAa -3'
miRNA:   3'- gaCCAAUUGCCCGug--CGUgACCCUCU- -5'
33613 3' -55.2 NC_007605.1 + 131780 0.73 0.641849
Target:  5'- -aGGcaAGcCGGGUACGCcCUGGGGGAg -3'
miRNA:   3'- gaCCaaUU-GCCCGUGCGuGACCCUCU- -5'
33613 3' -55.2 NC_007605.1 + 131608 0.76 0.445027
Target:  5'- -aGGcaAGCgGGGCACGCcCUGGGGGAg -3'
miRNA:   3'- gaCCaaUUG-CCCGUGCGuGACCCUCU- -5'
33613 3' -55.2 NC_007605.1 + 55714 0.84 0.159086
Target:  5'- gUGGUUGGCGGGUGuCGCAgaGGGAGAg -3'
miRNA:   3'- gACCAAUUGCCCGU-GCGUgaCCCUCU- -5'
33613 3' -55.2 NC_007605.1 + 157108 1.09 0.003942
Target:  5'- cCUGGUUAACGGGCACGCACUGGGAGAc -3'
miRNA:   3'- -GACCAAUUGCCCGUGCGUGACCCUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.