miRNA display CGI


Results 1 - 20 of 222 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33613 5' -62.2 NC_007605.1 + 121932 0.66 0.683383
Target:  5'- --aCCCCUGGGUggaucuugaGCUUGGCCugggcaauauagGCCAUg -3'
miRNA:   3'- guaGGGGGUCCG---------CGAACCGG------------CGGUGg -5'
33613 5' -62.2 NC_007605.1 + 100734 0.66 0.683383
Target:  5'- -cUCCCCCGGuuccccGCGC--GGCaCGCC-CCu -3'
miRNA:   3'- guAGGGGGUC------CGCGaaCCG-GCGGuGG- -5'
33613 5' -62.2 NC_007605.1 + 92097 0.66 0.683383
Target:  5'- --aCCUCgAGGUGCauuuggUGGCUcagaaaauGCCACCa -3'
miRNA:   3'- guaGGGGgUCCGCGa-----ACCGG--------CGGUGG- -5'
33613 5' -62.2 NC_007605.1 + 144034 0.66 0.683383
Target:  5'- uGUCCCuCCA-GCGUggUGGCUGCCu-- -3'
miRNA:   3'- gUAGGG-GGUcCGCGa-ACCGGCGGugg -5'
33613 5' -62.2 NC_007605.1 + 61175 0.66 0.683383
Target:  5'- uGUCCgCgGGGCc----GCCGCCACCg -3'
miRNA:   3'- gUAGGgGgUCCGcgaacCGGCGGUGG- -5'
33613 5' -62.2 NC_007605.1 + 41218 0.66 0.683383
Target:  5'- uGUCCCuCCA-GCGUggUGGCUGCCu-- -3'
miRNA:   3'- gUAGGG-GGUcCGCGa-ACCGGCGGugg -5'
33613 5' -62.2 NC_007605.1 + 150611 0.66 0.67369
Target:  5'- --cCUCCCGGGCGgUgGGCgGCCcgggcuCCa -3'
miRNA:   3'- guaGGGGGUCCGCgAaCCGgCGGu-----GG- -5'
33613 5' -62.2 NC_007605.1 + 14117 0.66 0.67369
Target:  5'- --aCCCCCAGGaagcgggucuaUGgUUGGCUGCgCugCu -3'
miRNA:   3'- guaGGGGGUCC-----------GCgAACCGGCG-GugG- -5'
33613 5' -62.2 NC_007605.1 + 20255 0.66 0.67369
Target:  5'- --aCCCCCAGGaagcgggucuaUGgUUGGCUGCgCugCu -3'
miRNA:   3'- guaGGGGGUCC-----------GCgAACCGGCG-GugG- -5'
33613 5' -62.2 NC_007605.1 + 36655 0.66 0.67369
Target:  5'- --cCCCUCAGGCcaGgUUGGuCCaGCCACa -3'
miRNA:   3'- guaGGGGGUCCG--CgAACC-GG-CGGUGg -5'
33613 5' -62.2 NC_007605.1 + 29462 0.66 0.67369
Target:  5'- --aCCCCCAGGaagcgggucuaUGgUUGGCUGCgCugCu -3'
miRNA:   3'- guaGGGGGUCC-----------GCgAACCGGCG-GugG- -5'
33613 5' -62.2 NC_007605.1 + 32531 0.66 0.67369
Target:  5'- --aCCCCCAGGaagcgggucuaUGgUUGGCUGCgCugCu -3'
miRNA:   3'- guaGGGGGUCC-----------GCgAACCGGCG-GugG- -5'
33613 5' -62.2 NC_007605.1 + 17186 0.66 0.67369
Target:  5'- --aCCCCCAGGaagcgggucuaUGgUUGGCUGCgCugCu -3'
miRNA:   3'- guaGGGGGUCC-----------GCgAACCGGCG-GugG- -5'
33613 5' -62.2 NC_007605.1 + 23324 0.66 0.67369
Target:  5'- --aCCCCCAGGaagcgggucuaUGgUUGGCUGCgCugCu -3'
miRNA:   3'- guaGGGGGUCC-----------GCgAACCGGCG-GugG- -5'
33613 5' -62.2 NC_007605.1 + 100428 0.66 0.67369
Target:  5'- aGUCCCCgaAGGUGCc-GGUauaGCCACa -3'
miRNA:   3'- gUAGGGGg-UCCGCGaaCCGg--CGGUGg -5'
33613 5' -62.2 NC_007605.1 + 26393 0.66 0.67369
Target:  5'- --aCCCCCAGGaagcgggucuaUGgUUGGCUGCgCugCu -3'
miRNA:   3'- guaGGGGGUCC-----------GCgAACCGGCG-GugG- -5'
33613 5' -62.2 NC_007605.1 + 2896 0.66 0.672719
Target:  5'- -cUCCUCCucuuGGCGCUacuguuuUGGCUGUaCAUCg -3'
miRNA:   3'- guAGGGGGu---CCGCGA-------ACCGGCG-GUGG- -5'
33613 5' -62.2 NC_007605.1 + 18483 0.66 0.667859
Target:  5'- aCAUCCUCCAGuGCcuCUUugauaacaacuccggGGCCGCCcucuCCg -3'
miRNA:   3'- -GUAGGGGGUC-CGc-GAA---------------CCGGCGGu---GG- -5'
33613 5' -62.2 NC_007605.1 + 131528 0.66 0.663966
Target:  5'- --aCCCCCAGG-GUggGGCCaGCgGaCCg -3'
miRNA:   3'- guaGGGGGUCCgCGaaCCGG-CGgU-GG- -5'
33613 5' -62.2 NC_007605.1 + 113212 0.66 0.661044
Target:  5'- --aUCCCCAGGCGCcacGGCaagaccuggauaguCGUgGCCa -3'
miRNA:   3'- guaGGGGGUCCGCGaa-CCG--------------GCGgUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.