miRNA display CGI


Results 1 - 20 of 222 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33613 5' -62.2 NC_007605.1 + 30534 0.69 0.473241
Target:  5'- -cUCCCCCGGuccccaGUagGGCCGCCugCc -3'
miRNA:   3'- guAGGGGGUCcg----CGaaCCGGCGGugG- -5'
33613 5' -62.2 NC_007605.1 + 91738 0.7 0.429516
Target:  5'- --gCCCgCAGGCGCggGGCCucgGCCcugGCCu -3'
miRNA:   3'- guaGGGgGUCCGCGaaCCGG---CGG---UGG- -5'
33613 5' -62.2 NC_007605.1 + 150807 0.69 0.455474
Target:  5'- aCAUCCCCUcGGCcCgcGGaCGCCGCCu -3'
miRNA:   3'- -GUAGGGGGuCCGcGaaCCgGCGGUGG- -5'
33613 5' -62.2 NC_007605.1 + 12120 0.69 0.473241
Target:  5'- -cUCCCCCGGuccccaGUagGGCCGCCugCc -3'
miRNA:   3'- guAGGGGGUCcg----CGaaCCGGCGGugG- -5'
33613 5' -62.2 NC_007605.1 + 15189 0.69 0.473241
Target:  5'- -cUCCCCCGGuccccaGUagGGCCGCCugCc -3'
miRNA:   3'- guAGGGGGUCcg----CGaaCCGGCGGugG- -5'
33613 5' -62.2 NC_007605.1 + 18258 0.69 0.473241
Target:  5'- -cUCCCCCGGuccccaGUagGGCCGCCugCc -3'
miRNA:   3'- guAGGGGGUCcg----CGaaCCGGCGGugG- -5'
33613 5' -62.2 NC_007605.1 + 21327 0.69 0.473241
Target:  5'- -cUCCCCCGGuccccaGUagGGCCGCCugCc -3'
miRNA:   3'- guAGGGGGUCcg----CGaaCCGGCGGugG- -5'
33613 5' -62.2 NC_007605.1 + 24396 0.69 0.473241
Target:  5'- -cUCCCCCGGuccccaGUagGGCCGCCugCc -3'
miRNA:   3'- guAGGGGGUCcg----CGaaCCGGCGGugG- -5'
33613 5' -62.2 NC_007605.1 + 27465 0.69 0.473241
Target:  5'- -cUCCCCCGGuccccaGUagGGCCGCCugCc -3'
miRNA:   3'- guAGGGGGUCcg----CGaaCCGGCGGugG- -5'
33613 5' -62.2 NC_007605.1 + 106214 0.7 0.421059
Target:  5'- uCAUCCCCCGaGCaGCuUUGGCaGaCCACCu -3'
miRNA:   3'- -GUAGGGGGUcCG-CG-AACCGgC-GGUGG- -5'
33613 5' -62.2 NC_007605.1 + 55064 0.7 0.421059
Target:  5'- --gCCUCCAGGCGCcaGGCCuG-CACCu -3'
miRNA:   3'- guaGGGGGUCCGCGaaCCGG-CgGUGG- -5'
33613 5' -62.2 NC_007605.1 + 126171 0.7 0.40445
Target:  5'- --aCCCCCGGGgGCccGGCC-CgGCCa -3'
miRNA:   3'- guaGGGGGUCCgCGaaCCGGcGgUGG- -5'
33613 5' -62.2 NC_007605.1 + 107812 0.76 0.189422
Target:  5'- cCAUCaCCCGGGCGCaaccGCCGCCGCUc -3'
miRNA:   3'- -GUAGgGGGUCCGCGaac-CGGCGGUGG- -5'
33613 5' -62.2 NC_007605.1 + 159821 0.74 0.236306
Target:  5'- --gCUCCCGGGCaaacagggcagagagGCgggaaUGGCCGCCACCc -3'
miRNA:   3'- guaGGGGGUCCG---------------CGa----ACCGGCGGUGG- -5'
33613 5' -62.2 NC_007605.1 + 50375 0.74 0.25089
Target:  5'- --gCCCCCgaggacGGGCGCc-GGCCGCCAgCg -3'
miRNA:   3'- guaGGGGG------UCCGCGaaCCGGCGGUgG- -5'
33613 5' -62.2 NC_007605.1 + 59136 0.74 0.25089
Target:  5'- gGUUCCCCGGGUGCgcUGGCUuuGCCcCCa -3'
miRNA:   3'- gUAGGGGGUCCGCGa-ACCGG--CGGuGG- -5'
33613 5' -62.2 NC_007605.1 + 154278 0.72 0.307123
Target:  5'- -uUCUCCCGGGCGCa-GGCCGgCuaGCCu -3'
miRNA:   3'- guAGGGGGUCCGCGaaCCGGCgG--UGG- -5'
33613 5' -62.2 NC_007605.1 + 133304 0.72 0.320859
Target:  5'- gGUCCCCCuccacgggaGGGCGCUcUGcGCCaGCC-CCg -3'
miRNA:   3'- gUAGGGGG---------UCCGCGA-AC-CGG-CGGuGG- -5'
33613 5' -62.2 NC_007605.1 + 108990 0.71 0.396302
Target:  5'- --cCCCCCuguuGGCaGCUaGGCUgucuGCCACCa -3'
miRNA:   3'- guaGGGGGu---CCG-CGAaCCGG----CGGUGG- -5'
33613 5' -62.2 NC_007605.1 + 63390 0.7 0.40445
Target:  5'- gGUCCCggacuUUGGGCgGCUggUGGCCGaCCGCCg -3'
miRNA:   3'- gUAGGG-----GGUCCG-CGA--ACCGGC-GGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.