miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33614 3' -62.7 NC_007605.1 + 157037 0.66 0.628279
Target:  5'- cACCAGGGggcGCGAGUAGCacaUGGUcucGGAGc -3'
miRNA:   3'- aUGGUCCC---CGCUCGUCGc--GCCG---UCUC- -5'
33614 3' -62.7 NC_007605.1 + 96503 0.66 0.628279
Target:  5'- --aCGGGGGUGGGCAccucGgGCucaaaGGCGGAGu -3'
miRNA:   3'- augGUCCCCGCUCGU----CgCG-----CCGUCUC- -5'
33614 3' -62.7 NC_007605.1 + 109603 0.66 0.627292
Target:  5'- gGCCcGGcGGCGGGCgguagagauccugGGCGUGuacGCGGAGg -3'
miRNA:   3'- aUGGuCC-CCGCUCG-------------UCGCGC---CGUCUC- -5'
33614 3' -62.7 NC_007605.1 + 39411 0.66 0.618413
Target:  5'- -uCCGGGGGCagccGGGCGGCcGCcGGUGGGu -3'
miRNA:   3'- auGGUCCCCG----CUCGUCG-CG-CCGUCUc -5'
33614 3' -62.7 NC_007605.1 + 39661 0.66 0.618413
Target:  5'- -uCCGGGGGCagccGGGCGGCcGCcGGUGGGu -3'
miRNA:   3'- auGGUCCCCG----CUCGUCG-CG-CCGUCUc -5'
33614 3' -62.7 NC_007605.1 + 39161 0.66 0.618413
Target:  5'- -uCCGGGGGCagccGGGCGGCcGCcGGUGGGu -3'
miRNA:   3'- auGGUCCCCG----CUCGUCG-CG-CCGUCUc -5'
33614 3' -62.7 NC_007605.1 + 39036 0.66 0.618413
Target:  5'- -uCCGGGGGCagccGGGCGGCcGCcGGUGGGu -3'
miRNA:   3'- auGGUCCCCG----CUCGUCG-CG-CCGUCUc -5'
33614 3' -62.7 NC_007605.1 + 38787 0.66 0.618413
Target:  5'- -uCCGGGGGCagccGGGCGGCcGCcGGUGGGu -3'
miRNA:   3'- auGGUCCCCG----CUCGUCG-CG-CCGUCUc -5'
33614 3' -62.7 NC_007605.1 + 38662 0.66 0.618413
Target:  5'- -uCCGGGGGCagccGGGCGGCcGCcGGUGGGu -3'
miRNA:   3'- auGGUCCCCG----CUCGUCG-CG-CCGUCUc -5'
33614 3' -62.7 NC_007605.1 + 38537 0.66 0.618413
Target:  5'- -uCCGGGGGCagccGGGCGGCcGCcGGUGGGu -3'
miRNA:   3'- auGGUCCCCG----CUCGUCG-CG-CCGUCUc -5'
33614 3' -62.7 NC_007605.1 + 38412 0.66 0.618413
Target:  5'- -uCCGGGGGCagccGGGCGGCcGCcGGUGGGu -3'
miRNA:   3'- auGGUCCCCG----CUCGUCG-CG-CCGUCUc -5'
33614 3' -62.7 NC_007605.1 + 155348 0.66 0.618413
Target:  5'- gUGCUGGaGGCGGGggauGGCGCGGCGGcAGc -3'
miRNA:   3'- -AUGGUCcCCGCUCg---UCGCGCCGUC-UC- -5'
33614 3' -62.7 NC_007605.1 + 38287 0.66 0.618413
Target:  5'- -uCCGGGGGCagccGGGCGGCcGCcGGUGGGu -3'
miRNA:   3'- auGGUCCCCG----CUCGUCG-CG-CCGUCUc -5'
33614 3' -62.7 NC_007605.1 + 39286 0.66 0.618413
Target:  5'- -uCCGGGGGCagccGGGCGGCcGCcGGUGGGu -3'
miRNA:   3'- auGGUCCCCG----CUCGUCG-CG-CCGUCUc -5'
33614 3' -62.7 NC_007605.1 + 39536 0.66 0.618413
Target:  5'- -uCCGGGGGCagccGGGCGGCcGCcGGUGGGu -3'
miRNA:   3'- auGGUCCCCG----CUCGUCG-CG-CCGUCUc -5'
33614 3' -62.7 NC_007605.1 + 85752 0.66 0.608557
Target:  5'- gGCCAGGGGCaacAGCAGacucuggaGUG-CGGAGg -3'
miRNA:   3'- aUGGUCCCCGc--UCGUCg-------CGCcGUCUC- -5'
33614 3' -62.7 NC_007605.1 + 147163 0.66 0.607573
Target:  5'- gGCCGGGucuaagguggccuGGCccGGGguGCGUGGCcaAGAGg -3'
miRNA:   3'- aUGGUCC-------------CCG--CUCguCGCGCCG--UCUC- -5'
33614 3' -62.7 NC_007605.1 + 150232 0.66 0.607573
Target:  5'- gGCCGGGucuaagguggccuGGCccGGGguGCGUGGCcaAGAGg -3'
miRNA:   3'- aUGGUCC-------------CCG--CUCguCGCGCCG--UCUC- -5'
33614 3' -62.7 NC_007605.1 + 153301 0.66 0.607573
Target:  5'- gGCCGGGucuaagguggccuGGCccGGGguGCGUGGCcaAGAGg -3'
miRNA:   3'- aUGGUCC-------------CCG--CUCguCGCGCCG--UCUC- -5'
33614 3' -62.7 NC_007605.1 + 144094 0.66 0.607573
Target:  5'- gGCCGGGucuaagguggccuGGCccGGGguGCGUGGCcaAGAGg -3'
miRNA:   3'- aUGGUCC-------------CCG--CUCguCGCGCCG--UCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.