miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33614 5' -56.4 NC_007605.1 + 70742 0.66 0.88199
Target:  5'- gUCUCgcguguuaggaaggaAGCAGG-GUGCCAGCUCUu- -3'
miRNA:   3'- aAGAGa--------------UCGUCCaCGUGGUCGAGGuc -5'
33614 5' -56.4 NC_007605.1 + 71807 0.66 0.881276
Target:  5'- gUCUCaGGCAccGGaUGCccCCGGCUCCAc -3'
miRNA:   3'- aAGAGaUCGU--CC-ACGu-GGUCGAGGUc -5'
33614 5' -56.4 NC_007605.1 + 151123 0.66 0.874017
Target:  5'- -cCUC-GGCGGcccGUGCcCCAGCUCCGu -3'
miRNA:   3'- aaGAGaUCGUC---CACGuGGUCGAGGUc -5'
33614 5' -56.4 NC_007605.1 + 19601 0.66 0.865774
Target:  5'- gUCUCUgccuccaGGCaAGG-GCGCCAGCUuuucuccccCCAGc -3'
miRNA:   3'- aAGAGA-------UCG-UCCaCGUGGUCGA---------GGUC- -5'
33614 5' -56.4 NC_007605.1 + 22670 0.66 0.865774
Target:  5'- gUCUCUgccuccaGGCaAGG-GCGCCAGCUuuucuccccCCAGc -3'
miRNA:   3'- aAGAGA-------UCG-UCCaCGUGGUCGA---------GGUC- -5'
33614 5' -56.4 NC_007605.1 + 25739 0.66 0.865774
Target:  5'- gUCUCUgccuccaGGCaAGG-GCGCCAGCUuuucuccccCCAGc -3'
miRNA:   3'- aAGAGA-------UCG-UCCaCGUGGUCGA---------GGUC- -5'
33614 5' -56.4 NC_007605.1 + 28808 0.66 0.865774
Target:  5'- gUCUCUgccuccaGGCaAGG-GCGCCAGCUuuucuccccCCAGc -3'
miRNA:   3'- aAGAGA-------UCG-UCCaCGUGGUCGA---------GGUC- -5'
33614 5' -56.4 NC_007605.1 + 31877 0.66 0.865774
Target:  5'- gUCUCUgccuccaGGCaAGG-GCGCCAGCUuuucuccccCCAGc -3'
miRNA:   3'- aAGAGA-------UCG-UCCaCGUGGUCGA---------GGUC- -5'
33614 5' -56.4 NC_007605.1 + 34945 0.66 0.865774
Target:  5'- gUCUCUgccuccaGGCaAGG-GCGCCAGCUuuucuccccCCAGc -3'
miRNA:   3'- aAGAGA-------UCG-UCCaCGUGGUCGA---------GGUC- -5'
33614 5' -56.4 NC_007605.1 + 16532 0.66 0.865774
Target:  5'- gUCUCUgccuccaGGCaAGG-GCGCCAGCUuuucuccccCCAGc -3'
miRNA:   3'- aAGAGA-------UCG-UCCaCGUGGUCGA---------GGUC- -5'
33614 5' -56.4 NC_007605.1 + 13463 0.66 0.865774
Target:  5'- gUCUCUgccuccaGGCaAGG-GCGCCAGCUuuucuccccCCAGc -3'
miRNA:   3'- aAGAGA-------UCG-UCCaCGUGGUCGA---------GGUC- -5'
33614 5' -56.4 NC_007605.1 + 96257 0.66 0.858834
Target:  5'- cUCUCUu-UAGGUGgGCCAGCUgCAc -3'
miRNA:   3'- aAGAGAucGUCCACgUGGUCGAgGUc -5'
33614 5' -56.4 NC_007605.1 + 73553 0.66 0.850923
Target:  5'- gUCUCccgggugaAGUAGGUGCGCauguGCUCCGc -3'
miRNA:   3'- aAGAGa-------UCGUCCACGUGgu--CGAGGUc -5'
33614 5' -56.4 NC_007605.1 + 70007 0.67 0.825992
Target:  5'- -gCUCUGGCAGuuauaaccGCACCAGCUaaCAGg -3'
miRNA:   3'- aaGAGAUCGUCca------CGUGGUCGAg-GUC- -5'
33614 5' -56.4 NC_007605.1 + 84169 0.67 0.825992
Target:  5'- aUCUCcaccggGGuCGGGUGgGCgGGCUCCAc -3'
miRNA:   3'- aAGAGa-----UC-GUCCACgUGgUCGAGGUc -5'
33614 5' -56.4 NC_007605.1 + 44797 0.67 0.817307
Target:  5'- -gCUCUAGCAGG-GUaaagaGCCGGUuuuuaaUCCGGg -3'
miRNA:   3'- aaGAGAUCGUCCaCG-----UGGUCG------AGGUC- -5'
33614 5' -56.4 NC_007605.1 + 163279 0.67 0.808449
Target:  5'- -cCUCcagcaUGGCGGGUGCguagcucaccGCCAGCUCgCAu -3'
miRNA:   3'- aaGAG-----AUCGUCCACG----------UGGUCGAG-GUc -5'
33614 5' -56.4 NC_007605.1 + 64145 0.68 0.77146
Target:  5'- gUC-CUGGCcGG-GCGCCuGCUCCAc -3'
miRNA:   3'- aAGaGAUCGuCCaCGUGGuCGAGGUc -5'
33614 5' -56.4 NC_007605.1 + 129478 0.68 0.761868
Target:  5'- -cCUCUGGCgaaaggcggagAGGUGUuucucuugcuGCUAGCUCCAa -3'
miRNA:   3'- aaGAGAUCG-----------UCCACG----------UGGUCGAGGUc -5'
33614 5' -56.4 NC_007605.1 + 155095 0.68 0.760903
Target:  5'- -cCUCUAugucuucGCAGGUGC-CCAGCgUCAGc -3'
miRNA:   3'- aaGAGAU-------CGUCCACGuGGUCGaGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.