miRNA display CGI


Results 21 - 40 of 123 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33615 3' -62.1 NC_007605.1 + 140808 0.66 0.687364
Target:  5'- -aG-CCGGG-UCCGGGGuUCCGGCCc -3'
miRNA:   3'- ugCaGGUCUgAGGCCCCcAGGUCGGc -5'
33615 3' -62.1 NC_007605.1 + 142643 0.66 0.687364
Target:  5'- -aG-CCGGG-UCCGGGGuUCCGGCCc -3'
miRNA:   3'- ugCaGGUCUgAGGCCCCcAGGUCGGc -5'
33615 3' -62.1 NC_007605.1 + 105615 0.66 0.687364
Target:  5'- gGCGUCCcagAGACUCCcaGGuucaGGUCCAGUa- -3'
miRNA:   3'- -UGCAGG---UCUGAGG--CCc---CCAGGUCGgc -5'
33615 3' -62.1 NC_007605.1 + 142337 0.66 0.687364
Target:  5'- -aG-CCGGG-UCCGGGGuUCCGGCCc -3'
miRNA:   3'- ugCaGGUCUgAGGCCCCcAGGUCGGc -5'
33615 3' -62.1 NC_007605.1 + 162175 0.66 0.665252
Target:  5'- aGCGUCUgguagugacccuuuAGccACUCUGGGGGgcUCUGGCCa -3'
miRNA:   3'- -UGCAGG--------------UC--UGAGGCCCCC--AGGUCGGc -5'
33615 3' -62.1 NC_007605.1 + 54366 0.66 0.657527
Target:  5'- gGCGUCCGG-CUacUCGGGGGUugagggugucaacCCGGCa- -3'
miRNA:   3'- -UGCAGGUCuGA--GGCCCCCA-------------GGUCGgc -5'
33615 3' -62.1 NC_007605.1 + 170644 0.67 0.639139
Target:  5'- -gGUCCgcGGGCUCCGGGGcUgCGGgCGg -3'
miRNA:   3'- ugCAGG--UCUGAGGCCCCcAgGUCgGC- -5'
33615 3' -62.1 NC_007605.1 + 10690 0.67 0.639139
Target:  5'- aGCGUCCGGGagCCGGGcGGcUCGGCUa -3'
miRNA:   3'- -UGCAGGUCUgaGGCCC-CCaGGUCGGc -5'
33615 3' -62.1 NC_007605.1 + 100836 0.67 0.638171
Target:  5'- -gGUCCAGcccacguACUgCGcGGGGUCCauuauGGCCGc -3'
miRNA:   3'- ugCAGGUC-------UGAgGC-CCCCAGG-----UCGGC- -5'
33615 3' -62.1 NC_007605.1 + 45538 0.67 0.629451
Target:  5'- gGCcaCCAGuCUCCGGgccGGGUCCGGgCCc -3'
miRNA:   3'- -UGcaGGUCuGAGGCC---CCCAGGUC-GGc -5'
33615 3' -62.1 NC_007605.1 + 81919 0.67 0.629451
Target:  5'- -gGUCCGGGCaCCuGGGGUaCCGGCg- -3'
miRNA:   3'- ugCAGGUCUGaGGcCCCCA-GGUCGgc -5'
33615 3' -62.1 NC_007605.1 + 46297 0.67 0.619765
Target:  5'- -aGUCUacgaAGACUCCGGGGG--CAGUCu -3'
miRNA:   3'- ugCAGG----UCUGAGGCCCCCagGUCGGc -5'
33615 3' -62.1 NC_007605.1 + 159484 0.67 0.600425
Target:  5'- gGCG-CCGGACgggCCGGGcucucGUgccCCAGCCGg -3'
miRNA:   3'- -UGCaGGUCUGa--GGCCCc----CA---GGUCGGC- -5'
33615 3' -62.1 NC_007605.1 + 15791 0.68 0.590783
Target:  5'- ---cCCAGAC-CCGGGucucGG-CCAGCCGa -3'
miRNA:   3'- ugcaGGUCUGaGGCCC----CCaGGUCGGC- -5'
33615 3' -62.1 NC_007605.1 + 38671 0.68 0.590783
Target:  5'- -aG-CCGGGCggccgCCGGuGGGUCCgcugGGCCGc -3'
miRNA:   3'- ugCaGGUCUGa----GGCC-CCCAGG----UCGGC- -5'
33615 3' -62.1 NC_007605.1 + 38546 0.68 0.590783
Target:  5'- -aG-CCGGGCggccgCCGGuGGGUCCgcugGGCCGc -3'
miRNA:   3'- ugCaGGUCUGa----GGCC-CCCAGG----UCGGC- -5'
33615 3' -62.1 NC_007605.1 + 38421 0.68 0.590783
Target:  5'- -aG-CCGGGCggccgCCGGuGGGUCCgcugGGCCGc -3'
miRNA:   3'- ugCaGGUCUGa----GGCC-CCCAGG----UCGGC- -5'
33615 3' -62.1 NC_007605.1 + 38296 0.68 0.590783
Target:  5'- -aG-CCGGGCggccgCCGGuGGGUCCgcugGGCCGc -3'
miRNA:   3'- ugCaGGUCUGa----GGCC-CCCAGG----UCGGC- -5'
33615 3' -62.1 NC_007605.1 + 31135 0.68 0.590783
Target:  5'- ---cCCAGAC-CCGGGucucGG-CCAGCCGa -3'
miRNA:   3'- ugcaGGUCUGaGGCCC----CCaGGUCGGC- -5'
33615 3' -62.1 NC_007605.1 + 34204 0.68 0.590783
Target:  5'- ---cCCAGAC-CCGGGucucGG-CCAGCCGa -3'
miRNA:   3'- ugcaGGUCUGaGGCCC----CCaGGUCGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.