miRNA display CGI


Results 21 - 40 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33616 3' -64.8 NC_007605.1 + 154957 0.66 0.562534
Target:  5'- uGGCCCGGgUGgacagaGGGCCUGUccacCGUGGg -3'
miRNA:   3'- gUCGGGCCgGC------UCCGGACGcu--GCGCC- -5'
33616 3' -64.8 NC_007605.1 + 20980 0.66 0.562534
Target:  5'- gGGCCgaggagGGCUG-GGUCUGCGACGUu- -3'
miRNA:   3'- gUCGGg-----CCGGCuCCGGACGCUGCGcc -5'
33616 3' -64.8 NC_007605.1 + 8879 0.66 0.562534
Target:  5'- gGGcCCCGGCCGuGuGCCUGaacACGCu- -3'
miRNA:   3'- gUC-GGGCCGGCuC-CGGACgc-UGCGcc -5'
33616 3' -64.8 NC_007605.1 + 142682 0.66 0.562534
Target:  5'- uGGCCCGGgUGgacagaGGGCCUGUccacCGUGGg -3'
miRNA:   3'- gUCGGGCCgGC------UCCGGACGcu--GCGCC- -5'
33616 3' -64.8 NC_007605.1 + 33930 0.66 0.543903
Target:  5'- cCGGCCCGGgUcuggGAGGUCUgGgGugGCGa -3'
miRNA:   3'- -GUCGGGCCgG----CUCCGGA-CgCugCGCc -5'
33616 3' -64.8 NC_007605.1 + 117800 0.66 0.543903
Target:  5'- -cGCCCuGGCCcGGGCa-GCGGC-CGGg -3'
miRNA:   3'- guCGGG-CCGGcUCCGgaCGCUGcGCC- -5'
33616 3' -64.8 NC_007605.1 + 10791 0.66 0.543903
Target:  5'- aGGCCuCGGCCG-GGCUgcUGCuGgGUGGa -3'
miRNA:   3'- gUCGG-GCCGGCuCCGG--ACGcUgCGCC- -5'
33616 3' -64.8 NC_007605.1 + 168912 0.66 0.534664
Target:  5'- -cGCCCuGGUCugaaAGGCCUGUuGGCGcCGGg -3'
miRNA:   3'- guCGGG-CCGGc---UCCGGACG-CUGC-GCC- -5'
33616 3' -64.8 NC_007605.1 + 61434 0.67 0.525479
Target:  5'- aCAGCCgucgCGGCgGGGGCg-GCGGCG-GGc -3'
miRNA:   3'- -GUCGG----GCCGgCUCCGgaCGCUGCgCC- -5'
33616 3' -64.8 NC_007605.1 + 97505 0.67 0.525479
Target:  5'- aCAGCCacagggggauGCCaGAGGCCgcGUGGCGUGGc -3'
miRNA:   3'- -GUCGGgc--------CGG-CUCCGGa-CGCUGCGCC- -5'
33616 3' -64.8 NC_007605.1 + 169754 0.67 0.525479
Target:  5'- gGGCCCcgGGUCuAGGCCgagcGCGgaGCGUGGg -3'
miRNA:   3'- gUCGGG--CCGGcUCCGGa---CGC--UGCGCC- -5'
33616 3' -64.8 NC_007605.1 + 109838 0.67 0.525479
Target:  5'- aGGCCCuGGCCGcucgugugcAGGag-GCGGCGgGGa -3'
miRNA:   3'- gUCGGG-CCGGC---------UCCggaCGCUGCgCC- -5'
33616 3' -64.8 NC_007605.1 + 60286 0.67 0.525479
Target:  5'- uCGGCCgUGGCCaGGGCCcaccugGCGGCgGCGu -3'
miRNA:   3'- -GUCGG-GCCGGcUCCGGa-----CGCUG-CGCc -5'
33616 3' -64.8 NC_007605.1 + 73438 0.67 0.522736
Target:  5'- gAGCCCGGCCcAGGCCcGCaugaguccgucaucGGgGuCGGg -3'
miRNA:   3'- gUCGGGCCGGcUCCGGaCG--------------CUgC-GCC- -5'
33616 3' -64.8 NC_007605.1 + 137970 0.67 0.516356
Target:  5'- uGGCCUGGcCCGGGGU--GCGugGCc- -3'
miRNA:   3'- gUCGGGCC-GGCUCCGgaCGCugCGcc -5'
33616 3' -64.8 NC_007605.1 + 147177 0.67 0.516356
Target:  5'- uGGCCUGGcCCGGGGU--GCGugGCc- -3'
miRNA:   3'- gUCGGGCC-GGCUCCGgaCGCugCGcc -5'
33616 3' -64.8 NC_007605.1 + 150246 0.67 0.516356
Target:  5'- uGGCCUGGcCCGGGGU--GCGugGCc- -3'
miRNA:   3'- gUCGGGCC-GGCUCCGgaCGCugCGcc -5'
33616 3' -64.8 NC_007605.1 + 156384 0.67 0.516356
Target:  5'- uGGCCUGGcCCGGGGU--GCGugGCc- -3'
miRNA:   3'- gUCGGGCC-GGCUCCGgaCGCugCGcc -5'
33616 3' -64.8 NC_007605.1 + 153315 0.67 0.516356
Target:  5'- uGGCCUGGcCCGGGGU--GCGugGCc- -3'
miRNA:   3'- gUCGGGCC-GGCUCCGgaCGCugCGcc -5'
33616 3' -64.8 NC_007605.1 + 159453 0.67 0.516356
Target:  5'- uGGCCUGGcCCGGGGU--GCGugGCc- -3'
miRNA:   3'- gUCGGGCC-GGCUCCGgaCGCugCGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.