miRNA display CGI


Results 21 - 40 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33616 5' -50.6 NC_007605.1 + 39100 0.66 0.995604
Target:  5'- uGGCCcCGCUGGgcaccGcugcgccgccgccagGUCCUGGGg -3'
miRNA:   3'- -CCGGuGCGACUauuu-Caa-------------CAGGACCC- -5'
33616 5' -50.6 NC_007605.1 + 38601 0.66 0.995604
Target:  5'- uGGCCcCGCUGGgcaccGcugcgccgccgccagGUCCUGGGg -3'
miRNA:   3'- -CCGGuGCGACUauuu-Caa-------------CAGGACCC- -5'
33616 5' -50.6 NC_007605.1 + 39725 0.66 0.995604
Target:  5'- uGGCCcCGCUGGgcaccGcugcgccgccgccagGUCCUGGGg -3'
miRNA:   3'- -CCGGuGCGACUauuu-Caa-------------CAGGACCC- -5'
33616 5' -50.6 NC_007605.1 + 39600 0.66 0.995604
Target:  5'- uGGCCcCGCUGGgcaccGcugcgccgccgccagGUCCUGGGg -3'
miRNA:   3'- -CCGGuGCGACUauuu-Caa-------------CAGGACCC- -5'
33616 5' -50.6 NC_007605.1 + 39475 0.66 0.995604
Target:  5'- uGGCCcCGCUGGgcaccGcugcgccgccgccagGUCCUGGGg -3'
miRNA:   3'- -CCGGuGCGACUauuu-Caa-------------CAGGACCC- -5'
33616 5' -50.6 NC_007605.1 + 38351 0.66 0.995604
Target:  5'- uGGCCcCGCUGGgcaccGcugcgccgccgccagGUCCUGGGg -3'
miRNA:   3'- -CCGGuGCGACUauuu-Caa-------------CAGGACCC- -5'
33616 5' -50.6 NC_007605.1 + 39225 0.66 0.995604
Target:  5'- uGGCCcCGCUGGgcaccGcugcgccgccgccagGUCCUGGGg -3'
miRNA:   3'- -CCGGuGCGACUauuu-Caa-------------CAGGACCC- -5'
33616 5' -50.6 NC_007605.1 + 38204 0.66 0.99518
Target:  5'- aGCCAgGCUGccggccaccaucagAGGGggGUCCgUGGGa -3'
miRNA:   3'- cCGGUgCGACua------------UUUCaaCAGG-ACCC- -5'
33616 5' -50.6 NC_007605.1 + 123624 0.66 0.995107
Target:  5'- gGGCCGCGUUGA---GGcUGUUUaGGGu -3'
miRNA:   3'- -CCGGUGCGACUauuUCaACAGGaCCC- -5'
33616 5' -50.6 NC_007605.1 + 149771 0.67 0.994645
Target:  5'- aGGCUGCGCgGAUucAGgacgcuuagcacgaUGUCCUGGu -3'
miRNA:   3'- -CCGGUGCGaCUAuuUCa-------------ACAGGACCc -5'
33616 5' -50.6 NC_007605.1 + 35290 0.67 0.994318
Target:  5'- gGGggACGCUGAUGAg---GUCCUGGc -3'
miRNA:   3'- -CCggUGCGACUAUUucaaCAGGACCc -5'
33616 5' -50.6 NC_007605.1 + 130419 0.67 0.994318
Target:  5'- -aCCACGCUGG-AGGGacaUUGUCCacGGGa -3'
miRNA:   3'- ccGGUGCGACUaUUUC---AACAGGa-CCC- -5'
33616 5' -50.6 NC_007605.1 + 101009 0.67 0.994318
Target:  5'- gGGCCACGUccacguAGGUcgcgGcCCUGGGg -3'
miRNA:   3'- -CCGGUGCGacuau-UUCAa---CaGGACCC- -5'
33616 5' -50.6 NC_007605.1 + 65535 0.67 0.993431
Target:  5'- gGGCCugGCcGAUGucuUUGcggaCCUGGGc -3'
miRNA:   3'- -CCGGugCGaCUAUuucAACa---GGACCC- -5'
33616 5' -50.6 NC_007605.1 + 72007 0.67 0.992436
Target:  5'- cGGgCACGCUGAUGGAGaaa---UGGGc -3'
miRNA:   3'- -CCgGUGCGACUAUUUCaacaggACCC- -5'
33616 5' -50.6 NC_007605.1 + 42090 0.67 0.99233
Target:  5'- cGCCAUGCUGAUGGccacggucaagauGGagGagCUGGGu -3'
miRNA:   3'- cCGGUGCGACUAUU-------------UCaaCagGACCC- -5'
33616 5' -50.6 NC_007605.1 + 111119 0.67 0.991324
Target:  5'- aGGCCugGgUcucucGAGGggGUUCUGGGg -3'
miRNA:   3'- -CCGGugCgAcua--UUUCaaCAGGACCC- -5'
33616 5' -50.6 NC_007605.1 + 16221 0.67 0.990845
Target:  5'- uGCCACGCgccgcu--UUGUCCUGGa -3'
miRNA:   3'- cCGGUGCGacuauuucAACAGGACCc -5'
33616 5' -50.6 NC_007605.1 + 161889 0.67 0.990087
Target:  5'- gGGCC-CGUUGAUGAuguAGUUcucccUCCUGGu -3'
miRNA:   3'- -CCGGuGCGACUAUU---UCAAc----AGGACCc -5'
33616 5' -50.6 NC_007605.1 + 149618 0.67 0.990087
Target:  5'- gGGCU-CGCUGGUGuuuAGcUUGUCCccgcucUGGGu -3'
miRNA:   3'- -CCGGuGCGACUAUu--UC-AACAGG------ACCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.