Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33617 | 3' | -63.5 | NC_007605.1 | + | 160942 | 1.05 | 0.001262 |
Target: 5'- aAAGUCCCGAGCGGCCUCCGCCGUCCAc -3' miRNA: 3'- -UUCAGGGCUCGCCGGAGGCGGCAGGU- -5' |
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33617 | 3' | -63.5 | NC_007605.1 | + | 51851 | 0.77 | 0.12417 |
Target: 5'- -cGUCCCG-GCGGCUgCUGCCGUCCc -3' miRNA: 3'- uuCAGGGCuCGCCGGaGGCGGCAGGu -5' |
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33617 | 3' | -63.5 | NC_007605.1 | + | 115212 | 0.75 | 0.18324 |
Target: 5'- cAGUCCCuGcuCGGCCUCCGCCG-CCu -3' miRNA: 3'- uUCAGGG-CucGCCGGAGGCGGCaGGu -5' |
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33617 | 3' | -63.5 | NC_007605.1 | + | 14967 | 0.72 | 0.259884 |
Target: 5'- uAGUCCCGGGCuucaGGCCcCCuCCGUCCc -3' miRNA: 3'- uUCAGGGCUCG----CCGGaGGcGGCAGGu -5' |
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33617 | 3' | -63.5 | NC_007605.1 | + | 63389 | 0.71 | 0.315313 |
Target: 5'- uGGUCCCGgacuuugggcggcuGGUGGCCgaCCGCCGcuUCCAc -3' miRNA: 3'- uUCAGGGC--------------UCGCCGGa-GGCGGC--AGGU- -5' |
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33617 | 3' | -63.5 | NC_007605.1 | + | 38396 | 0.69 | 0.399928 |
Target: 5'- cAGGUCCUG-GCGGaucuCCUCCGCCcuggCCAg -3' miRNA: 3'- -UUCAGGGCuCGCC----GGAGGCGGca--GGU- -5' |
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33617 | 3' | -63.5 | NC_007605.1 | + | 121266 | 0.69 | 0.416343 |
Target: 5'- -cGUCCuCGGgggcagcccaccGCGGCC-CCGCCGUCg- -3' miRNA: 3'- uuCAGG-GCU------------CGCCGGaGGCGGCAGgu -5' |
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33617 | 3' | -63.5 | NC_007605.1 | + | 20857 | 0.69 | 0.423863 |
Target: 5'- cAGUCCCGGgcucugcucuggcGCGGCCUCgGCUGggaCAc -3' miRNA: 3'- uUCAGGGCU-------------CGCCGGAGgCGGCag-GU- -5' |
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33617 | 3' | -63.5 | NC_007605.1 | + | 97389 | 0.68 | 0.44172 |
Target: 5'- --uUCCUGcGCGGCCUCaCGCCGcUCAc -3' miRNA: 3'- uucAGGGCuCGCCGGAG-GCGGCaGGU- -5' |
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33617 | 3' | -63.5 | NC_007605.1 | + | 56335 | 0.68 | 0.450372 |
Target: 5'- ---gUUCGGGCGGCCUCCGCCa---- -3' miRNA: 3'- uucaGGGCUCGCCGGAGGCGGcaggu -5' |
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33617 | 3' | -63.5 | NC_007605.1 | + | 127424 | 0.68 | 0.485875 |
Target: 5'- ---cCCCGGGCGcuGCCUUCGCCuGUCUc -3' miRNA: 3'- uucaGGGCUCGC--CGGAGGCGG-CAGGu -5' |
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33617 | 3' | -63.5 | NC_007605.1 | + | 47759 | 0.67 | 0.513353 |
Target: 5'- aGAGgCCCGGG-GGCCuugUCCGCUGggCCAg -3' miRNA: 3'- -UUCaGGGCUCgCCGG---AGGCGGCa-GGU- -5' |
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33617 | 3' | -63.5 | NC_007605.1 | + | 95139 | 0.67 | 0.513353 |
Target: 5'- --uUCCCcAGCGGCCUCCag-GUCCAa -3' miRNA: 3'- uucAGGGcUCGCCGGAGGcggCAGGU- -5' |
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33617 | 3' | -63.5 | NC_007605.1 | + | 13023 | 0.67 | 0.522654 |
Target: 5'- cAG-CCCGGGCGGCC-CCagagGCCGguUCCu -3' miRNA: 3'- uUCaGGGCUCGCCGGaGG----CGGC--AGGu -5' |
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33617 | 3' | -63.5 | NC_007605.1 | + | 19161 | 0.67 | 0.522654 |
Target: 5'- cAG-CCCGGGCGGCC-CCagagGCCGguUCCu -3' miRNA: 3'- uUCaGGGCUCGCCGGaGG----CGGC--AGGu -5' |
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33617 | 3' | -63.5 | NC_007605.1 | + | 34506 | 0.67 | 0.522654 |
Target: 5'- cAG-CCCGGGCGGCC-CCagagGCCGguUCCu -3' miRNA: 3'- uUCaGGGCUCGCCGGaGG----CGGC--AGGu -5' |
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33617 | 3' | -63.5 | NC_007605.1 | + | 31437 | 0.67 | 0.522654 |
Target: 5'- cAG-CCCGGGCGGCC-CCagagGCCGguUCCu -3' miRNA: 3'- uUCaGGGCUCGCCGGaGG----CGGC--AGGu -5' |
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33617 | 3' | -63.5 | NC_007605.1 | + | 28368 | 0.67 | 0.522654 |
Target: 5'- cAG-CCCGGGCGGCC-CCagagGCCGguUCCu -3' miRNA: 3'- uUCaGGGCUCGCCGGaGG----CGGC--AGGu -5' |
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33617 | 3' | -63.5 | NC_007605.1 | + | 25299 | 0.67 | 0.522654 |
Target: 5'- cAG-CCCGGGCGGCC-CCagagGCCGguUCCu -3' miRNA: 3'- uUCaGGGCUCGCCGGaGG----CGGC--AGGu -5' |
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33617 | 3' | -63.5 | NC_007605.1 | + | 22230 | 0.67 | 0.522654 |
Target: 5'- cAG-CCCGGGCGGCC-CCagagGCCGguUCCu -3' miRNA: 3'- uUCaGGGCUCGCCGGaGG----CGGC--AGGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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