miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33617 3' -63.5 NC_007605.1 + 160942 1.05 0.001262
Target:  5'- aAAGUCCCGAGCGGCCUCCGCCGUCCAc -3'
miRNA:   3'- -UUCAGGGCUCGCCGGAGGCGGCAGGU- -5'
33617 3' -63.5 NC_007605.1 + 51851 0.77 0.12417
Target:  5'- -cGUCCCG-GCGGCUgCUGCCGUCCc -3'
miRNA:   3'- uuCAGGGCuCGCCGGaGGCGGCAGGu -5'
33617 3' -63.5 NC_007605.1 + 115212 0.75 0.18324
Target:  5'- cAGUCCCuGcuCGGCCUCCGCCG-CCu -3'
miRNA:   3'- uUCAGGG-CucGCCGGAGGCGGCaGGu -5'
33617 3' -63.5 NC_007605.1 + 14967 0.72 0.259884
Target:  5'- uAGUCCCGGGCuucaGGCCcCCuCCGUCCc -3'
miRNA:   3'- uUCAGGGCUCG----CCGGaGGcGGCAGGu -5'
33617 3' -63.5 NC_007605.1 + 63389 0.71 0.315313
Target:  5'- uGGUCCCGgacuuugggcggcuGGUGGCCgaCCGCCGcuUCCAc -3'
miRNA:   3'- uUCAGGGC--------------UCGCCGGa-GGCGGC--AGGU- -5'
33617 3' -63.5 NC_007605.1 + 38396 0.69 0.399928
Target:  5'- cAGGUCCUG-GCGGaucuCCUCCGCCcuggCCAg -3'
miRNA:   3'- -UUCAGGGCuCGCC----GGAGGCGGca--GGU- -5'
33617 3' -63.5 NC_007605.1 + 121266 0.69 0.416343
Target:  5'- -cGUCCuCGGgggcagcccaccGCGGCC-CCGCCGUCg- -3'
miRNA:   3'- uuCAGG-GCU------------CGCCGGaGGCGGCAGgu -5'
33617 3' -63.5 NC_007605.1 + 20857 0.69 0.423863
Target:  5'- cAGUCCCGGgcucugcucuggcGCGGCCUCgGCUGggaCAc -3'
miRNA:   3'- uUCAGGGCU-------------CGCCGGAGgCGGCag-GU- -5'
33617 3' -63.5 NC_007605.1 + 97389 0.68 0.44172
Target:  5'- --uUCCUGcGCGGCCUCaCGCCGcUCAc -3'
miRNA:   3'- uucAGGGCuCGCCGGAG-GCGGCaGGU- -5'
33617 3' -63.5 NC_007605.1 + 56335 0.68 0.450372
Target:  5'- ---gUUCGGGCGGCCUCCGCCa---- -3'
miRNA:   3'- uucaGGGCUCGCCGGAGGCGGcaggu -5'
33617 3' -63.5 NC_007605.1 + 127424 0.68 0.485875
Target:  5'- ---cCCCGGGCGcuGCCUUCGCCuGUCUc -3'
miRNA:   3'- uucaGGGCUCGC--CGGAGGCGG-CAGGu -5'
33617 3' -63.5 NC_007605.1 + 47759 0.67 0.513353
Target:  5'- aGAGgCCCGGG-GGCCuugUCCGCUGggCCAg -3'
miRNA:   3'- -UUCaGGGCUCgCCGG---AGGCGGCa-GGU- -5'
33617 3' -63.5 NC_007605.1 + 95139 0.67 0.513353
Target:  5'- --uUCCCcAGCGGCCUCCag-GUCCAa -3'
miRNA:   3'- uucAGGGcUCGCCGGAGGcggCAGGU- -5'
33617 3' -63.5 NC_007605.1 + 13023 0.67 0.522654
Target:  5'- cAG-CCCGGGCGGCC-CCagagGCCGguUCCu -3'
miRNA:   3'- uUCaGGGCUCGCCGGaGG----CGGC--AGGu -5'
33617 3' -63.5 NC_007605.1 + 19161 0.67 0.522654
Target:  5'- cAG-CCCGGGCGGCC-CCagagGCCGguUCCu -3'
miRNA:   3'- uUCaGGGCUCGCCGGaGG----CGGC--AGGu -5'
33617 3' -63.5 NC_007605.1 + 34506 0.67 0.522654
Target:  5'- cAG-CCCGGGCGGCC-CCagagGCCGguUCCu -3'
miRNA:   3'- uUCaGGGCUCGCCGGaGG----CGGC--AGGu -5'
33617 3' -63.5 NC_007605.1 + 31437 0.67 0.522654
Target:  5'- cAG-CCCGGGCGGCC-CCagagGCCGguUCCu -3'
miRNA:   3'- uUCaGGGCUCGCCGGaGG----CGGC--AGGu -5'
33617 3' -63.5 NC_007605.1 + 28368 0.67 0.522654
Target:  5'- cAG-CCCGGGCGGCC-CCagagGCCGguUCCu -3'
miRNA:   3'- uUCaGGGCUCGCCGGaGG----CGGC--AGGu -5'
33617 3' -63.5 NC_007605.1 + 25299 0.67 0.522654
Target:  5'- cAG-CCCGGGCGGCC-CCagagGCCGguUCCu -3'
miRNA:   3'- uUCaGGGCUCGCCGGaGG----CGGC--AGGu -5'
33617 3' -63.5 NC_007605.1 + 22230 0.67 0.522654
Target:  5'- cAG-CCCGGGCGGCC-CCagagGCCGguUCCu -3'
miRNA:   3'- uUCaGGGCUCGCCGGaGG----CGGC--AGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.