Results 41 - 52 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33617 | 5' | -56.3 | NC_007605.1 | + | 48438 | 0.66 | 0.895497 |
Target: 5'- gGC-GGGGGCGuaggggaggagcucGUGGggGCCGGGGg-- -3' miRNA: 3'- -CGaCCUCCGU--------------UACCagCGGUCCCaaa -5' |
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33617 | 5' | -56.3 | NC_007605.1 | + | 45171 | 0.7 | 0.687817 |
Target: 5'- --aGGAGGCAggggcccugcgaAUGGUCGCCAGccuccGGUc- -3' miRNA: 3'- cgaCCUCCGU------------UACCAGCGGUC-----CCAaa -5' |
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33617 | 5' | -56.3 | NC_007605.1 | + | 39968 | 0.7 | 0.667411 |
Target: 5'- gGCUGGGGGCuggGGUC-CCGGGa--- -3' miRNA: 3'- -CGACCUCCGuuaCCAGcGGUCCcaaa -5' |
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33617 | 5' | -56.3 | NC_007605.1 | + | 34015 | 0.66 | 0.869522 |
Target: 5'- --gGGAGGCAGagGGUCGgccuaggcCCGGGGa-- -3' miRNA: 3'- cgaCCUCCGUUa-CCAGC--------GGUCCCaaa -5' |
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33617 | 5' | -56.3 | NC_007605.1 | + | 30946 | 0.66 | 0.869522 |
Target: 5'- --gGGAGGCAGagGGUCGgccuaggcCCGGGGa-- -3' miRNA: 3'- cgaCCUCCGUUa-CCAGC--------GGUCCCaaa -5' |
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33617 | 5' | -56.3 | NC_007605.1 | + | 27878 | 0.66 | 0.869522 |
Target: 5'- --gGGAGGCAGagGGUCGgccuaggcCCGGGGa-- -3' miRNA: 3'- cgaCCUCCGUUa-CCAGC--------GGUCCCaaa -5' |
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33617 | 5' | -56.3 | NC_007605.1 | + | 24809 | 0.66 | 0.869522 |
Target: 5'- --gGGAGGCAGagGGUCGgccuaggcCCGGGGa-- -3' miRNA: 3'- cgaCCUCCGUUa-CCAGC--------GGUCCCaaa -5' |
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33617 | 5' | -56.3 | NC_007605.1 | + | 21740 | 0.66 | 0.869522 |
Target: 5'- --gGGAGGCAGagGGUCGgccuaggcCCGGGGa-- -3' miRNA: 3'- cgaCCUCCGUUa-CCAGC--------GGUCCCaaa -5' |
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33617 | 5' | -56.3 | NC_007605.1 | + | 20508 | 0.75 | 0.430327 |
Target: 5'- aGCUGG-GGCAcgGGcCGCCgAGGGg-- -3' miRNA: 3'- -CGACCuCCGUuaCCaGCGG-UCCCaaa -5' |
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33617 | 5' | -56.3 | NC_007605.1 | + | 18671 | 0.66 | 0.869522 |
Target: 5'- --gGGAGGCAGagGGUCGgccuaggcCCGGGGa-- -3' miRNA: 3'- cgaCCUCCGUUa-CCAGC--------GGUCCCaaa -5' |
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33617 | 5' | -56.3 | NC_007605.1 | + | 15602 | 0.66 | 0.869522 |
Target: 5'- --gGGAGGCAGagGGUCGgccuaggcCCGGGGa-- -3' miRNA: 3'- cgaCCUCCGUUa-CCAGC--------GGUCCCaaa -5' |
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33617 | 5' | -56.3 | NC_007605.1 | + | 12533 | 0.66 | 0.869522 |
Target: 5'- --gGGAGGCAGagGGUCGgccuaggcCCGGGGa-- -3' miRNA: 3'- cgaCCUCCGUUa-CCAGC--------GGUCCCaaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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