Results 21 - 40 of 52 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33617 | 5' | -56.3 | NC_007605.1 | + | 27878 | 0.66 | 0.869522 |
Target: 5'- --gGGAGGCAGagGGUCGgccuaggcCCGGGGa-- -3' miRNA: 3'- cgaCCUCCGUUa-CCAGC--------GGUCCCaaa -5' |
|||||||
33617 | 5' | -56.3 | NC_007605.1 | + | 24809 | 0.66 | 0.869522 |
Target: 5'- --gGGAGGCAGagGGUCGgccuaggcCCGGGGa-- -3' miRNA: 3'- cgaCCUCCGUUa-CCAGC--------GGUCCCaaa -5' |
|||||||
33617 | 5' | -56.3 | NC_007605.1 | + | 145600 | 0.67 | 0.854238 |
Target: 5'- --cGGGGGuCGGgcugGGcCGCCAGGGg-- -3' miRNA: 3'- cgaCCUCC-GUUa---CCaGCGGUCCCaaa -5' |
|||||||
33617 | 5' | -56.3 | NC_007605.1 | + | 139462 | 0.67 | 0.854238 |
Target: 5'- --cGGGGGuCGGgcugGGcCGCCAGGGg-- -3' miRNA: 3'- cgaCCUCC-GUUa---CCaGCGGUCCCaaa -5' |
|||||||
33617 | 5' | -56.3 | NC_007605.1 | + | 136393 | 0.67 | 0.854238 |
Target: 5'- --cGGGGGuCGGgcugGGcCGCCAGGGg-- -3' miRNA: 3'- cgaCCUCC-GUUa---CCaGCGGUCCCaaa -5' |
|||||||
33617 | 5' | -56.3 | NC_007605.1 | + | 142531 | 0.67 | 0.854238 |
Target: 5'- --cGGGGGuCGGgcugGGcCGCCAGGGg-- -3' miRNA: 3'- cgaCCUCC-GUUa---CCaGCGGUCCCaaa -5' |
|||||||
33617 | 5' | -56.3 | NC_007605.1 | + | 148669 | 0.67 | 0.854238 |
Target: 5'- --cGGGGGuCGGgcugGGcCGCCAGGGg-- -3' miRNA: 3'- cgaCCUCC-GUUa---CCaGCGGUCCCaaa -5' |
|||||||
33617 | 5' | -56.3 | NC_007605.1 | + | 151737 | 0.67 | 0.854238 |
Target: 5'- --cGGGGGuCGGgcugGGcCGCCAGGGg-- -3' miRNA: 3'- cgaCCUCC-GUUa---CCaGCGGUCCCaaa -5' |
|||||||
33617 | 5' | -56.3 | NC_007605.1 | + | 154806 | 0.67 | 0.854238 |
Target: 5'- --cGGGGGuCGGgcugGGcCGCCAGGGg-- -3' miRNA: 3'- cgaCCUCC-GUUa---CCaGCGGUCCCaaa -5' |
|||||||
33617 | 5' | -56.3 | NC_007605.1 | + | 157875 | 0.67 | 0.854238 |
Target: 5'- --cGGGGGuCGGgcugGGcCGCCAGGGg-- -3' miRNA: 3'- cgaCCUCC-GUUa---CCaGCGGUCCCaaa -5' |
|||||||
33617 | 5' | -56.3 | NC_007605.1 | + | 157041 | 0.67 | 0.829807 |
Target: 5'- --aGGGGGCGcgaguagcacAUGGUCucggaGCCAGGGa-- -3' miRNA: 3'- cgaCCUCCGU----------UACCAG-----CGGUCCCaaa -5' |
|||||||
33617 | 5' | -56.3 | NC_007605.1 | + | 87228 | 0.68 | 0.776268 |
Target: 5'- cGCUGGAGGaccacuGUGGggGCCuGGGa-- -3' miRNA: 3'- -CGACCUCCgu----UACCagCGGuCCCaaa -5' |
|||||||
33617 | 5' | -56.3 | NC_007605.1 | + | 117923 | 0.69 | 0.766837 |
Target: 5'- aGCUGGGGGCGcgGGU-GCCuGGc--- -3' miRNA: 3'- -CGACCUCCGUuaCCAgCGGuCCcaaa -5' |
|||||||
33617 | 5' | -56.3 | NC_007605.1 | + | 69518 | 0.69 | 0.766837 |
Target: 5'- uCUGuGGGGCGAUGGcCuCCGGGGg-- -3' miRNA: 3'- cGAC-CUCCGUUACCaGcGGUCCCaaa -5' |
|||||||
33617 | 5' | -56.3 | NC_007605.1 | + | 51375 | 0.69 | 0.737855 |
Target: 5'- uGCUGGAGcCGGUcggaGGagGCCGGGGUg- -3' miRNA: 3'- -CGACCUCcGUUA----CCagCGGUCCCAaa -5' |
|||||||
33617 | 5' | -56.3 | NC_007605.1 | + | 135177 | 0.69 | 0.727996 |
Target: 5'- uGgUGGGGGUggUGGggGCgGGGGUg- -3' miRNA: 3'- -CgACCUCCGuuACCagCGgUCCCAaa -5' |
|||||||
33617 | 5' | -56.3 | NC_007605.1 | + | 136717 | 0.69 | 0.718054 |
Target: 5'- uGCagGGGGGCugacaccgGGcCGCCGGGGUc- -3' miRNA: 3'- -CGa-CCUCCGuua-----CCaGCGGUCCCAaa -5' |
|||||||
33617 | 5' | -56.3 | NC_007605.1 | + | 45171 | 0.7 | 0.687817 |
Target: 5'- --aGGAGGCAggggcccugcgaAUGGUCGCCAGccuccGGUc- -3' miRNA: 3'- cgaCCUCCGU------------UACCAGCGGUC-----CCAaa -5' |
|||||||
33617 | 5' | -56.3 | NC_007605.1 | + | 58047 | 0.7 | 0.667411 |
Target: 5'- gGCUGGAGGCcggggccgcGGagGCCGGGGc-- -3' miRNA: 3'- -CGACCUCCGuua------CCagCGGUCCCaaa -5' |
|||||||
33617 | 5' | -56.3 | NC_007605.1 | + | 39968 | 0.7 | 0.667411 |
Target: 5'- gGCUGGGGGCuggGGUC-CCGGGa--- -3' miRNA: 3'- -CGACCUCCGuuaCCAGcGGUCCcaaa -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home