miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33618 5' -55.1 NC_007605.1 + 167669 0.67 0.914977
Target:  5'- uCCGUCUgucauCAAAGGcGGGCCcuGGUCAc- -3'
miRNA:   3'- -GGCAGGu----GUUUCU-CCCGGu-CCAGUcu -5'
33618 5' -55.1 NC_007605.1 + 74429 0.67 0.909071
Target:  5'- gCGggCCAgGuuGuGGGCCGGGUcCAGGg -3'
miRNA:   3'- gGCa-GGUgUuuCuCCCGGUCCA-GUCU- -5'
33618 5' -55.1 NC_007605.1 + 116699 0.68 0.902932
Target:  5'- aCCG-CCACGuAGAcgcGGGCCaccguccggggaAGGUCAGu -3'
miRNA:   3'- -GGCaGGUGUuUCU---CCCGG------------UCCAGUCu -5'
33618 5' -55.1 NC_007605.1 + 44204 0.68 0.902932
Target:  5'- cCCGaggCACgGAAGAGGGCCGGGaUGGGu -3'
miRNA:   3'- -GGCag-GUG-UUUCUCCCGGUCCaGUCU- -5'
33618 5' -55.1 NC_007605.1 + 104664 0.68 0.889295
Target:  5'- uUCGgcgCCGCcc-GGGGGCCagucuccGGGUCAGGu -3'
miRNA:   3'- -GGCa--GGUGuuuCUCCCGG-------UCCAGUCU- -5'
33618 5' -55.1 NC_007605.1 + 132217 0.68 0.883147
Target:  5'- gUCGgagCCAuCAAGGGGGGCCAgugGGUgGGc -3'
miRNA:   3'- -GGCa--GGU-GUUUCUCCCGGU---CCAgUCu -5'
33618 5' -55.1 NC_007605.1 + 53077 0.68 0.883147
Target:  5'- gUGUCUGCGGAGAcguaGGCCGGGUUAa- -3'
miRNA:   3'- gGCAGGUGUUUCUc---CCGGUCCAGUcu -5'
33618 5' -55.1 NC_007605.1 + 60950 0.69 0.86139
Target:  5'- -gGUCaGCucgggggaAGGGAGGGCCAGGUCGc- -3'
miRNA:   3'- ggCAGgUG--------UUUCUCCCGGUCCAGUcu -5'
33618 5' -55.1 NC_007605.1 + 110339 0.69 0.86139
Target:  5'- gCCGUCUGCGcccccacGGGGCCacacgccgagGGGUCAGGg -3'
miRNA:   3'- -GGCAGGUGUuuc----UCCCGG----------UCCAGUCU- -5'
33618 5' -55.1 NC_007605.1 + 56442 0.69 0.853723
Target:  5'- gCGg-CACuguGGGGGUCGGGUCGGGg -3'
miRNA:   3'- gGCagGUGuuuCUCCCGGUCCAGUCU- -5'
33618 5' -55.1 NC_007605.1 + 58055 0.69 0.829559
Target:  5'- gCCGgggCCGCGGAGgccGGGGCCgcggAGGcCGGGg -3'
miRNA:   3'- -GGCa--GGUGUUUC---UCCCGG----UCCaGUCU- -5'
33618 5' -55.1 NC_007605.1 + 40397 0.7 0.821141
Target:  5'- gCCG-CCGCAAGGAcgccGGGCCGGcUgGGAg -3'
miRNA:   3'- -GGCaGGUGUUUCU----CCCGGUCcAgUCU- -5'
33618 5' -55.1 NC_007605.1 + 143212 0.7 0.821141
Target:  5'- gCCG-CCGCAAGGAcgccGGGCCGGcUgGGAg -3'
miRNA:   3'- -GGCaGGUGUUUCU----CCCGGUCcAgUCU- -5'
33618 5' -55.1 NC_007605.1 + 58100 0.7 0.821141
Target:  5'- gCCGgggCCGCGGAGgccggggccgcGGaGGCCGGGgccgCAGAg -3'
miRNA:   3'- -GGCa--GGUGUUUC-----------UC-CCGGUCCa---GUCU- -5'
33618 5' -55.1 NC_007605.1 + 95567 0.7 0.812553
Target:  5'- aUGUCUgACGA--GGGGCCAGGUaCAGGa -3'
miRNA:   3'- gGCAGG-UGUUucUCCCGGUCCA-GUCU- -5'
33618 5' -55.1 NC_007605.1 + 158860 0.7 0.812553
Target:  5'- cCCGgcggcuggCCcCGAGGAGGcGCCAGGcgCGGGg -3'
miRNA:   3'- -GGCa-------GGuGUUUCUCC-CGGUCCa-GUCU- -5'
33618 5' -55.1 NC_007605.1 + 155791 0.7 0.812553
Target:  5'- cCCGgcggcuggCCcCGAGGAGGcGCCAGGcgCGGGg -3'
miRNA:   3'- -GGCa-------GGuGUUUCUCC-CGGUCCa-GUCU- -5'
33618 5' -55.1 NC_007605.1 + 152722 0.7 0.812553
Target:  5'- cCCGgcggcuggCCcCGAGGAGGcGCCAGGcgCGGGg -3'
miRNA:   3'- -GGCa-------GGuGUUUCUCC-CGGUCCa-GUCU- -5'
33618 5' -55.1 NC_007605.1 + 149654 0.7 0.812553
Target:  5'- cCCGgcggcuggCCcCGAGGAGGcGCCAGGcgCGGGg -3'
miRNA:   3'- -GGCa-------GGuGUUUCUCC-CGGUCCa-GUCU- -5'
33618 5' -55.1 NC_007605.1 + 137378 0.7 0.812553
Target:  5'- cCCGgcggcuggCCcCGAGGAGGcGCCAGGcgCGGGg -3'
miRNA:   3'- -GGCa-------GGuGUUUCUCC-CGGUCCa-GUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.