miRNA display CGI

Results 1 - 7 of 7 are showing below:
Show page: 1

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
33619	3'	-47.1	NC_007605.1	+	58827	0.66	0.999796
	Target:  5'- -aGCUGggCAcguccgucAACUGGGCCAUcUCg -3' miRNA:   3'- uaCGACaaGUau------UUGACCUGGUGaAG- -5'
33619	3'	-47.1	NC_007605.1	+	21042	0.67	0.999467
	Target:  5'- -gGCUGUUCucUGAGCaUGGACCcCggUCu -3' miRNA:   3'- uaCGACAAGu-AUUUG-ACCUGGuGa-AG- -5'
33619	3'	-47.1	NC_007605.1	+	134944	0.67	0.999289
	Target:  5'- gGUGCUGUcgggCGUAGaggggggacaugugGCUGGACCAa--- -3' miRNA:   3'- -UACGACAa---GUAUU--------------UGACCUGGUgaag -5'
33619	3'	-47.1	NC_007605.1	+	130876	0.67	0.999173
	Target:  5'- gAUGCUGUUCuUAuacAGCUucucGGccacACCACUUCg -3' miRNA:   3'- -UACGACAAGuAU---UUGA----CC----UGGUGAAG- -5'
33619	3'	-47.1	NC_007605.1	+	8903	0.68	0.998476
	Target:  5'- -cGCUcUUCuuUAGGCUgagGGACCGCUUCc -3' miRNA:   3'- uaCGAcAAGu-AUUUGA---CCUGGUGAAG- -5'
33619	3'	-47.1	NC_007605.1	+	70798	0.69	0.997335
	Target:  5'- -cGCaGUaCGUGGGCUGGACCcggcuCUUCc -3' miRNA:   3'- uaCGaCAaGUAUUUGACCUGGu----GAAG- -5'
33619	3'	-47.1	NC_007605.1	+	162408	1.1	0.017323
	Target:  5'- cAUGCUGUUCAUAAACUGGACCACUUCg -3' miRNA:   3'- -UACGACAAGUAUUUGACCUGGUGAAG- -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home