Results 21 - 40 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33619 | 5' | -52.9 | NC_007605.1 | + | 57962 | 0.69 | 0.934927 |
Target: 5'- gCGCCGC-UCgACGcCCUUGGugGCGUg -3' miRNA: 3'- gGCGGCGuAGgUGCaGGAACU--UGUAg -5' |
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33619 | 5' | -52.9 | NC_007605.1 | + | 74821 | 0.69 | 0.913059 |
Target: 5'- aCGCCGU--CCGCGUCCcUGAGagcuGUCg -3' miRNA: 3'- gGCGGCGuaGGUGCAGGaACUUg---UAG- -5' |
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33619 | 5' | -52.9 | NC_007605.1 | + | 111076 | 0.68 | 0.938355 |
Target: 5'- cCCGCCGCuUUCugGUCUcgggUGAgacccucucggaggACAUCu -3' miRNA: 3'- -GGCGGCGuAGGugCAGGa---ACU--------------UGUAG- -5' |
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33619 | 5' | -52.9 | NC_007605.1 | + | 118763 | 0.68 | 0.960542 |
Target: 5'- gCCGCCGCcgCCGacUCCUacugGGACAc- -3' miRNA: 3'- -GGCGGCGuaGGUgcAGGAa---CUUGUag -5' |
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33619 | 5' | -52.9 | NC_007605.1 | + | 122845 | 0.68 | 0.956855 |
Target: 5'- aCCGCCGCAgagCCGCaGUUg--GAGCAg- -3' miRNA: 3'- -GGCGGCGUa--GGUG-CAGgaaCUUGUag -5' |
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33619 | 5' | -52.9 | NC_007605.1 | + | 126977 | 0.68 | 0.95294 |
Target: 5'- cCUG-CGCAUCCACGgCCUUGAccugguACAg- -3' miRNA: 3'- -GGCgGCGUAGGUGCaGGAACU------UGUag -5' |
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33619 | 5' | -52.9 | NC_007605.1 | + | 69811 | 0.68 | 0.939788 |
Target: 5'- gCGCUcuCGUCCACGUUCaugUUGAACAUg -3' miRNA: 3'- gGCGGc-GUAGGUGCAGG---AACUUGUAg -5' |
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33619 | 5' | -52.9 | NC_007605.1 | + | 159708 | 0.68 | 0.95172 |
Target: 5'- cCCGCCGCAgaagagCCGC-UCCgUGGccccgggagccacgGCGUCa -3' miRNA: 3'- -GGCGGCGUa-----GGUGcAGGaACU--------------UGUAG- -5' |
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33619 | 5' | -52.9 | NC_007605.1 | + | 90244 | 0.68 | 0.94441 |
Target: 5'- uCCGCUGCcgCC-CcUCCUUGAGCc-- -3' miRNA: 3'- -GGCGGCGuaGGuGcAGGAACUUGuag -5' |
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33619 | 5' | -52.9 | NC_007605.1 | + | 40033 | 0.68 | 0.948793 |
Target: 5'- gCC-CCGCuugCCugGUCCUgGAGC-UCa -3' miRNA: 3'- -GGcGGCGua-GGugCAGGAaCUUGuAG- -5' |
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33619 | 5' | -52.9 | NC_007605.1 | + | 117078 | 0.68 | 0.960542 |
Target: 5'- uUCGCCuGCAcaUCC-CGUCCU---ACAUCa -3' miRNA: 3'- -GGCGG-CGU--AGGuGCAGGAacuUGUAG- -5' |
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33619 | 5' | -52.9 | NC_007605.1 | + | 41332 | 0.68 | 0.948793 |
Target: 5'- cCCGCCuuuaggaaGCA-CCACGUCCcggGGACGg- -3' miRNA: 3'- -GGCGG--------CGUaGGUGCAGGaa-CUUGUag -5' |
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33619 | 5' | -52.9 | NC_007605.1 | + | 103079 | 0.68 | 0.955317 |
Target: 5'- cCCGCCGCAguugcggcagaagCCGCGUCUguaGAUAUa -3' miRNA: 3'- -GGCGGCGUa------------GGUGCAGGaacUUGUAg -5' |
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33619 | 5' | -52.9 | NC_007605.1 | + | 101423 | 0.68 | 0.95294 |
Target: 5'- cCCGCCGCuggaguUCCucuagggcgGCGUCCguaGAGCGa- -3' miRNA: 3'- -GGCGGCGu-----AGG---------UGCAGGaa-CUUGUag -5' |
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33619 | 5' | -52.9 | NC_007605.1 | + | 144148 | 0.68 | 0.948793 |
Target: 5'- cCCGCCuuuaggaaGCA-CCACGUCCcggGGACGg- -3' miRNA: 3'- -GGCGG--------CGUaGGUGCAGGaa-CUUGUag -5' |
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33619 | 5' | -52.9 | NC_007605.1 | + | 61866 | 0.67 | 0.975735 |
Target: 5'- aCGCCGUAagUugGUCCcaGAGCAg- -3' miRNA: 3'- gGCGGCGUagGugCAGGaaCUUGUag -5' |
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33619 | 5' | -52.9 | NC_007605.1 | + | 39895 | 0.67 | 0.969989 |
Target: 5'- gUCGCUGCAUCCGCcgguaggGUUCgaUGGGCGUg -3' miRNA: 3'- -GGCGGCGUAGGUG-------CAGGa-ACUUGUAg -5' |
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33619 | 5' | -52.9 | NC_007605.1 | + | 163658 | 0.67 | 0.975735 |
Target: 5'- uCCGCUGUAgaguCGUCCUUGAagGCcUCg -3' miRNA: 3'- -GGCGGCGUagguGCAGGAACU--UGuAG- -5' |
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33619 | 5' | -52.9 | NC_007605.1 | + | 80201 | 0.67 | 0.975735 |
Target: 5'- -aGCCGCggCUACGg---UGAGCAUCc -3' miRNA: 3'- ggCGGCGuaGGUGCaggaACUUGUAG- -5' |
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33619 | 5' | -52.9 | NC_007605.1 | + | 162066 | 0.67 | 0.970282 |
Target: 5'- -gGCCGCGUCCAgGUCU---GGCAggUCg -3' miRNA: 3'- ggCGGCGUAGGUgCAGGaacUUGU--AG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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