Results 41 - 49 of 49 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 33619 | 5' | -52.9 | NC_007605.1 | + | 61866 | 0.67 | 0.975735 |
|
Target: 5'- aCGCCGUAagUugGUCCcaGAGCAg- -3' miRNA: 3'- gGCGGCGUagGugCAGGaaCUUGUag -5' |
|||||||
| 33619 | 5' | -52.9 | NC_007605.1 | + | 80201 | 0.67 | 0.975735 |
|
Target: 5'- -aGCCGCggCUACGg---UGAGCAUCc -3' miRNA: 3'- ggCGGCGuaGGUGCaggaACUUGUAG- -5' |
|||||||
| 33619 | 5' | -52.9 | NC_007605.1 | + | 163658 | 0.67 | 0.975735 |
|
Target: 5'- uCCGCUGUAgaguCGUCCUUGAagGCcUCg -3' miRNA: 3'- -GGCGGCGUagguGCAGGAACU--UGuAG- -5' |
|||||||
| 33619 | 5' | -52.9 | NC_007605.1 | + | 149433 | 0.66 | 0.978168 |
|
Target: 5'- uCCGgCGUGUCCACGgagaCUcGGACGUa -3' miRNA: 3'- -GGCgGCGUAGGUGCag--GAaCUUGUAg -5' |
|||||||
| 33619 | 5' | -52.9 | NC_007605.1 | + | 114718 | 0.66 | 0.980417 |
|
Target: 5'- -gGCagGCAUCCgGCGUCUUUGGuGCAUUg -3' miRNA: 3'- ggCGg-CGUAGG-UGCAGGAACU-UGUAG- -5' |
|||||||
| 33619 | 5' | -52.9 | NC_007605.1 | + | 116699 | 0.66 | 0.982488 |
|
Target: 5'- aCCGCCacguagacGCGggCCAcCGUCCgggGAAgGUCa -3' miRNA: 3'- -GGCGG--------CGUa-GGU-GCAGGaa-CUUgUAG- -5' |
|||||||
| 33619 | 5' | -52.9 | NC_007605.1 | + | 136330 | 0.66 | 0.984389 |
|
Target: 5'- gCCGCCGCGggCCAgGaCCUcaucAGCGUCc -3' miRNA: 3'- -GGCGGCGUa-GGUgCaGGAac--UUGUAG- -5' |
|||||||
| 33619 | 5' | -52.9 | NC_007605.1 | + | 95348 | 0.66 | 0.984389 |
|
Target: 5'- -aGCCGCcgCCGCGUUUgugGGACu-- -3' miRNA: 3'- ggCGGCGuaGGUGCAGGaa-CUUGuag -5' |
|||||||
| 33619 | 5' | -52.9 | NC_007605.1 | + | 97742 | 0.66 | 0.984389 |
|
Target: 5'- -gGCCGCcgUCACGUCCcUGGcCGa- -3' miRNA: 3'- ggCGGCGuaGGUGCAGGaACUuGUag -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home