miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33619 5' -52.9 NC_007605.1 + 57962 0.69 0.934927
Target:  5'- gCGCCGC-UCgACGcCCUUGGugGCGUg -3'
miRNA:   3'- gGCGGCGuAGgUGCaGGAACU--UGUAg -5'
33619 5' -52.9 NC_007605.1 + 59308 0.7 0.88035
Target:  5'- gCCGCCGCcgCCGCuugcccgCCUUGAAgGa- -3'
miRNA:   3'- -GGCGGCGuaGGUGca-----GGAACUUgUag -5'
33619 5' -52.9 NC_007605.1 + 61866 0.67 0.975735
Target:  5'- aCGCCGUAagUugGUCCcaGAGCAg- -3'
miRNA:   3'- gGCGGCGUagGugCAGGaaCUUGUag -5'
33619 5' -52.9 NC_007605.1 + 69811 0.68 0.939788
Target:  5'- gCGCUcuCGUCCACGUUCaugUUGAACAUg -3'
miRNA:   3'- gGCGGc-GUAGGUGCAGG---AACUUGUAg -5'
33619 5' -52.9 NC_007605.1 + 70673 0.69 0.913059
Target:  5'- gCGCUGCA-CCgACGUCCaguUUGGACAccUCa -3'
miRNA:   3'- gGCGGCGUaGG-UGCAGG---AACUUGU--AG- -5'
33619 5' -52.9 NC_007605.1 + 74821 0.69 0.913059
Target:  5'- aCGCCGU--CCGCGUCCcUGAGagcuGUCg -3'
miRNA:   3'- gGCGGCGuaGGUGCAGGaACUUg---UAG- -5'
33619 5' -52.9 NC_007605.1 + 76288 0.67 0.964005
Target:  5'- cCCGCUGaaCAUCCucaagauuuGCGUCCU-GAGCcUCa -3'
miRNA:   3'- -GGCGGC--GUAGG---------UGCAGGAaCUUGuAG- -5'
33619 5' -52.9 NC_007605.1 + 80201 0.67 0.975735
Target:  5'- -aGCCGCggCUACGg---UGAGCAUCc -3'
miRNA:   3'- ggCGGCGuaGGUGCaggaACUUGUAG- -5'
33619 5' -52.9 NC_007605.1 + 90244 0.68 0.94441
Target:  5'- uCCGCUGCcgCC-CcUCCUUGAGCc-- -3'
miRNA:   3'- -GGCGGCGuaGGuGcAGGAACUUGuag -5'
33619 5' -52.9 NC_007605.1 + 95348 0.66 0.984389
Target:  5'- -aGCCGCcgCCGCGUUUgugGGACu-- -3'
miRNA:   3'- ggCGGCGuaGGUGCAGGaa-CUUGuag -5'
33619 5' -52.9 NC_007605.1 + 97568 0.67 0.96725
Target:  5'- gCGCCGCAUcuaCCGCGUU----AACAUCu -3'
miRNA:   3'- gGCGGCGUA---GGUGCAGgaacUUGUAG- -5'
33619 5' -52.9 NC_007605.1 + 97742 0.66 0.984389
Target:  5'- -gGCCGCcgUCACGUCCcUGGcCGa- -3'
miRNA:   3'- ggCGGCGuaGGUGCAGGaACUuGUag -5'
33619 5' -52.9 NC_007605.1 + 101423 0.68 0.95294
Target:  5'- cCCGCCGCuggaguUCCucuagggcgGCGUCCguaGAGCGa- -3'
miRNA:   3'- -GGCGGCGu-----AGG---------UGCAGGaa-CUUGUag -5'
33619 5' -52.9 NC_007605.1 + 103079 0.68 0.955317
Target:  5'- cCCGCCGCAguugcggcagaagCCGCGUCUguaGAUAUa -3'
miRNA:   3'- -GGCGGCGUa------------GGUGCAGGaacUUGUAg -5'
33619 5' -52.9 NC_007605.1 + 107831 0.75 0.641066
Target:  5'- gCCGCCGCucuUCUACGUCCU----CAUCu -3'
miRNA:   3'- -GGCGGCGu--AGGUGCAGGAacuuGUAG- -5'
33619 5' -52.9 NC_007605.1 + 111076 0.68 0.938355
Target:  5'- cCCGCCGCuUUCugGUCUcgggUGAgacccucucggaggACAUCu -3'
miRNA:   3'- -GGCGGCGuAGGugCAGGa---ACU--------------UGUAG- -5'
33619 5' -52.9 NC_007605.1 + 114718 0.66 0.980417
Target:  5'- -gGCagGCAUCCgGCGUCUUUGGuGCAUUg -3'
miRNA:   3'- ggCGg-CGUAGG-UGCAGGAACU-UGUAG- -5'
33619 5' -52.9 NC_007605.1 + 116699 0.66 0.982488
Target:  5'- aCCGCCacguagacGCGggCCAcCGUCCgggGAAgGUCa -3'
miRNA:   3'- -GGCGG--------CGUa-GGU-GCAGGaa-CUUgUAG- -5'
33619 5' -52.9 NC_007605.1 + 117078 0.68 0.960542
Target:  5'- uUCGCCuGCAcaUCC-CGUCCU---ACAUCa -3'
miRNA:   3'- -GGCGG-CGU--AGGuGCAGGAacuUGUAG- -5'
33619 5' -52.9 NC_007605.1 + 118763 0.68 0.960542
Target:  5'- gCCGCCGCcgCCGacUCCUacugGGACAc- -3'
miRNA:   3'- -GGCGGCGuaGGUgcAGGAa---CUUGUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.