miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33619 5' -52.9 NC_007605.1 + 162442 1.12 0.004329
Target:  5'- aCCGCCGCAUCCACGUCCUUGAACAUCu -3'
miRNA:   3'- -GGCGGCGUAGGUGCAGGAACUUGUAG- -5'
33619 5' -52.9 NC_007605.1 + 49479 0.81 0.365296
Target:  5'- gCCGCCGCAUCCGCuGggaccggggCCUUG-GCAUCa -3'
miRNA:   3'- -GGCGGCGUAGGUG-Ca--------GGAACuUGUAG- -5'
33619 5' -52.9 NC_007605.1 + 39745 0.77 0.559058
Target:  5'- gCGCCGCcgCCAgGUCCUgGGGCAg- -3'
miRNA:   3'- gGCGGCGuaGGUgCAGGAaCUUGUag -5'
33619 5' -52.9 NC_007605.1 + 39620 0.77 0.559058
Target:  5'- gCGCCGCcgCCAgGUCCUgGGGCAg- -3'
miRNA:   3'- gGCGGCGuaGGUgCAGGAaCUUGUag -5'
33619 5' -52.9 NC_007605.1 + 39495 0.77 0.559058
Target:  5'- gCGCCGCcgCCAgGUCCUgGGGCAg- -3'
miRNA:   3'- gGCGGCGuaGGUgCAGGAaCUUGUag -5'
33619 5' -52.9 NC_007605.1 + 39370 0.77 0.559058
Target:  5'- gCGCCGCcgCCAgGUCCUgGGGCAg- -3'
miRNA:   3'- gGCGGCGuaGGUgCAGGAaCUUGUag -5'
33619 5' -52.9 NC_007605.1 + 39245 0.77 0.559058
Target:  5'- gCGCCGCcgCCAgGUCCUgGGGCAg- -3'
miRNA:   3'- gGCGGCGuaGGUgCAGGAaCUUGUag -5'
33619 5' -52.9 NC_007605.1 + 39120 0.77 0.559058
Target:  5'- gCGCCGCcgCCAgGUCCUgGGGCAg- -3'
miRNA:   3'- gGCGGCGuaGGUgCAGGAaCUUGUag -5'
33619 5' -52.9 NC_007605.1 + 38995 0.77 0.559058
Target:  5'- gCGCCGCcgCCAgGUCCUgGGGCAg- -3'
miRNA:   3'- gGCGGCGuaGGUgCAGGAaCUUGUag -5'
33619 5' -52.9 NC_007605.1 + 38871 0.77 0.559058
Target:  5'- gCGCCGCcgCCAgGUCCUgGGGCAg- -3'
miRNA:   3'- gGCGGCGuaGGUgCAGGAaCUUGUag -5'
33619 5' -52.9 NC_007605.1 + 38746 0.77 0.559058
Target:  5'- gCGCCGCcgCCAgGUCCUgGGGCAg- -3'
miRNA:   3'- gGCGGCGuaGGUgCAGGAaCUUGUag -5'
33619 5' -52.9 NC_007605.1 + 38621 0.77 0.559058
Target:  5'- gCGCCGCcgCCAgGUCCUgGGGCAg- -3'
miRNA:   3'- gGCGGCGuaGGUgCAGGAaCUUGUag -5'
33619 5' -52.9 NC_007605.1 + 38496 0.77 0.559058
Target:  5'- gCGCCGCcgCCAgGUCCUgGGGCAg- -3'
miRNA:   3'- gGCGGCGuaGGUgCAGGAaCUUGUag -5'
33619 5' -52.9 NC_007605.1 + 38371 0.77 0.559058
Target:  5'- gCGCCGCcgCCAgGUCCUgGGGCAg- -3'
miRNA:   3'- gGCGGCGuaGGUgCAGGAaCUUGUag -5'
33619 5' -52.9 NC_007605.1 + 107831 0.75 0.641066
Target:  5'- gCCGCCGCucuUCUACGUCCU----CAUCu -3'
miRNA:   3'- -GGCGGCGu--AGGUGCAGGAacuuGUAG- -5'
33619 5' -52.9 NC_007605.1 + 54618 0.73 0.742314
Target:  5'- uCCGCCGCAccaCCAuCGUCCacGAGCAg- -3'
miRNA:   3'- -GGCGGCGUa--GGU-GCAGGaaCUUGUag -5'
33619 5' -52.9 NC_007605.1 + 6259 0.71 0.858008
Target:  5'- uUGCCGCAguuggugcgggcUCCACGcCCUcGGGCAUg -3'
miRNA:   3'- gGCGGCGU------------AGGUGCaGGAaCUUGUAg -5'
33619 5' -52.9 NC_007605.1 + 22176 0.71 0.86567
Target:  5'- aCGCCGCGguaagggCUACGUCCgagucuccgUGGACAc- -3'
miRNA:   3'- gGCGGCGUa------GGUGCAGGa--------ACUUGUag -5'
33619 5' -52.9 NC_007605.1 + 59308 0.7 0.88035
Target:  5'- gCCGCCGCcgCCGCuugcccgCCUUGAAgGa- -3'
miRNA:   3'- -GGCGGCGuaGGUGca-----GGAACUUgUag -5'
33619 5' -52.9 NC_007605.1 + 74821 0.69 0.913059
Target:  5'- aCGCCGU--CCGCGUCCcUGAGagcuGUCg -3'
miRNA:   3'- gGCGGCGuaGGUGCAGGaACUUg---UAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.