Results 21 - 40 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33619 | 5' | -52.9 | NC_007605.1 | + | 159708 | 0.68 | 0.95172 |
Target: 5'- cCCGCCGCAgaagagCCGC-UCCgUGGccccgggagccacgGCGUCa -3' miRNA: 3'- -GGCGGCGUa-----GGUGcAGGaACU--------------UGUAG- -5' |
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33619 | 5' | -52.9 | NC_007605.1 | + | 41332 | 0.68 | 0.948793 |
Target: 5'- cCCGCCuuuaggaaGCA-CCACGUCCcggGGACGg- -3' miRNA: 3'- -GGCGG--------CGUaGGUGCAGGaa-CUUGUag -5' |
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33619 | 5' | -52.9 | NC_007605.1 | + | 144148 | 0.68 | 0.948793 |
Target: 5'- cCCGCCuuuaggaaGCA-CCACGUCCcggGGACGg- -3' miRNA: 3'- -GGCGG--------CGUaGGUGCAGGaa-CUUGUag -5' |
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33619 | 5' | -52.9 | NC_007605.1 | + | 40033 | 0.68 | 0.948793 |
Target: 5'- gCC-CCGCuugCCugGUCCUgGAGC-UCa -3' miRNA: 3'- -GGcGGCGua-GGugCAGGAaCUUGuAG- -5' |
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33619 | 5' | -52.9 | NC_007605.1 | + | 90244 | 0.68 | 0.94441 |
Target: 5'- uCCGCUGCcgCC-CcUCCUUGAGCc-- -3' miRNA: 3'- -GGCGGCGuaGGuGcAGGAACUUGuag -5' |
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33619 | 5' | -52.9 | NC_007605.1 | + | 69811 | 0.68 | 0.939788 |
Target: 5'- gCGCUcuCGUCCACGUUCaugUUGAACAUg -3' miRNA: 3'- gGCGGc-GUAGGUGCAGG---AACUUGUAg -5' |
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33619 | 5' | -52.9 | NC_007605.1 | + | 111076 | 0.68 | 0.938355 |
Target: 5'- cCCGCCGCuUUCugGUCUcgggUGAgacccucucggaggACAUCu -3' miRNA: 3'- -GGCGGCGuAGGugCAGGa---ACU--------------UGUAG- -5' |
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33619 | 5' | -52.9 | NC_007605.1 | + | 57962 | 0.69 | 0.934927 |
Target: 5'- gCGCCGC-UCgACGcCCUUGGugGCGUg -3' miRNA: 3'- gGCGGCGuAGgUGCaGGAACU--UGUAg -5' |
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33619 | 5' | -52.9 | NC_007605.1 | + | 74821 | 0.69 | 0.913059 |
Target: 5'- aCGCCGU--CCGCGUCCcUGAGagcuGUCg -3' miRNA: 3'- gGCGGCGuaGGUGCAGGaACUUg---UAG- -5' |
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33619 | 5' | -52.9 | NC_007605.1 | + | 70673 | 0.69 | 0.913059 |
Target: 5'- gCGCUGCA-CCgACGUCCaguUUGGACAccUCa -3' miRNA: 3'- gGCGGCGUaGG-UGCAGG---AACUUGU--AG- -5' |
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33619 | 5' | -52.9 | NC_007605.1 | + | 59308 | 0.7 | 0.88035 |
Target: 5'- gCCGCCGCcgCCGCuugcccgCCUUGAAgGa- -3' miRNA: 3'- -GGCGGCGuaGGUGca-----GGAACUUgUag -5' |
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33619 | 5' | -52.9 | NC_007605.1 | + | 22176 | 0.71 | 0.86567 |
Target: 5'- aCGCCGCGguaagggCUACGUCCgagucuccgUGGACAc- -3' miRNA: 3'- gGCGGCGUa------GGUGCAGGa--------ACUUGUag -5' |
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33619 | 5' | -52.9 | NC_007605.1 | + | 6259 | 0.71 | 0.858008 |
Target: 5'- uUGCCGCAguuggugcgggcUCCACGcCCUcGGGCAUg -3' miRNA: 3'- gGCGGCGU------------AGGUGCaGGAaCUUGUAg -5' |
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33619 | 5' | -52.9 | NC_007605.1 | + | 54618 | 0.73 | 0.742314 |
Target: 5'- uCCGCCGCAccaCCAuCGUCCacGAGCAg- -3' miRNA: 3'- -GGCGGCGUa--GGU-GCAGGaaCUUGUag -5' |
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33619 | 5' | -52.9 | NC_007605.1 | + | 107831 | 0.75 | 0.641066 |
Target: 5'- gCCGCCGCucuUCUACGUCCU----CAUCu -3' miRNA: 3'- -GGCGGCGu--AGGUGCAGGAacuuGUAG- -5' |
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33619 | 5' | -52.9 | NC_007605.1 | + | 38371 | 0.77 | 0.559058 |
Target: 5'- gCGCCGCcgCCAgGUCCUgGGGCAg- -3' miRNA: 3'- gGCGGCGuaGGUgCAGGAaCUUGUag -5' |
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33619 | 5' | -52.9 | NC_007605.1 | + | 38871 | 0.77 | 0.559058 |
Target: 5'- gCGCCGCcgCCAgGUCCUgGGGCAg- -3' miRNA: 3'- gGCGGCGuaGGUgCAGGAaCUUGUag -5' |
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33619 | 5' | -52.9 | NC_007605.1 | + | 38746 | 0.77 | 0.559058 |
Target: 5'- gCGCCGCcgCCAgGUCCUgGGGCAg- -3' miRNA: 3'- gGCGGCGuaGGUgCAGGAaCUUGUag -5' |
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33619 | 5' | -52.9 | NC_007605.1 | + | 39495 | 0.77 | 0.559058 |
Target: 5'- gCGCCGCcgCCAgGUCCUgGGGCAg- -3' miRNA: 3'- gGCGGCGuaGGUgCAGGAaCUUGUag -5' |
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33619 | 5' | -52.9 | NC_007605.1 | + | 39745 | 0.77 | 0.559058 |
Target: 5'- gCGCCGCcgCCAgGUCCUgGGGCAg- -3' miRNA: 3'- gGCGGCGuaGGUgCAGGAaCUUGUag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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