miRNA display CGI


Results 21 - 40 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33620 3' -62.8 NC_007605.1 + 151127 0.66 0.655122
Target:  5'- gGCgGCCCGUgccccagCUCCGuCACgGGGGgcgCAu -3'
miRNA:   3'- -CGaCGGGCA-------GAGGCcGUGgCCCCa--GU- -5'
33620 3' -62.8 NC_007605.1 + 142711 0.66 0.646437
Target:  5'- cGCUcCCCG-CUCCGGCGg-GGGGUg- -3'
miRNA:   3'- -CGAcGGGCaGAGGCCGUggCCCCAgu -5'
33620 3' -62.8 NC_007605.1 + 73460 0.66 0.646437
Target:  5'- --aGUCCGUCaUCGGggUCGGGGUCc -3'
miRNA:   3'- cgaCGGGCAGaGGCCguGGCCCCAGu -5'
33620 3' -62.8 NC_007605.1 + 127431 0.66 0.634846
Target:  5'- cGCUGCCUucgccuGUCUCCcuucGGCcacagccugacuCUGGGGUCu -3'
miRNA:   3'- -CGACGGG------CAGAGG----CCGu-----------GGCCCCAGu -5'
33620 3' -62.8 NC_007605.1 + 39942 0.66 0.624219
Target:  5'- uGCUgGCCCGguacgccuggauugCCGGCuggggGCUGGGGUCc -3'
miRNA:   3'- -CGA-CGGGCaga-----------GGCCG-----UGGCCCCAGu -5'
33620 3' -62.8 NC_007605.1 + 65955 0.67 0.617458
Target:  5'- gGCgagGCCgGcCUuCUGGCACCGGGcGcCAc -3'
miRNA:   3'- -CGa--CGGgCaGA-GGCCGUGGCCC-CaGU- -5'
33620 3' -62.8 NC_007605.1 + 85243 0.67 0.60781
Target:  5'- uGCcGCCCGUUccCCGGCAgaggccUCGGGGg-- -3'
miRNA:   3'- -CGaCGGGCAGa-GGCCGU------GGCCCCagu -5'
33620 3' -62.8 NC_007605.1 + 156225 0.67 0.60781
Target:  5'- gGCUGCCUGcaaugcUCUgCUGGcCACUGaGGGUCc -3'
miRNA:   3'- -CGACGGGC------AGA-GGCC-GUGGC-CCCAGu -5'
33620 3' -62.8 NC_007605.1 + 72673 0.68 0.550465
Target:  5'- aCUGCCCucagauggGUCUUCGuCACUGGGGUa- -3'
miRNA:   3'- cGACGGG--------CAGAGGCcGUGGCCCCAgu -5'
33620 3' -62.8 NC_007605.1 + 158332 0.68 0.546693
Target:  5'- gGCUGCCgGgguccCUCCGGCuggccugguggacCCGGGGa-- -3'
miRNA:   3'- -CGACGGgCa----GAGGCCGu------------GGCCCCagu -5'
33620 3' -62.8 NC_007605.1 + 152194 0.68 0.546693
Target:  5'- gGCUGCCgGgguccCUCCGGCuggccugguggacCCGGGGa-- -3'
miRNA:   3'- -CGACGGgCa----GAGGCCGu------------GGCCCCagu -5'
33620 3' -62.8 NC_007605.1 + 142987 0.68 0.546693
Target:  5'- gGCUGCCgGgguccCUCCGGCuggccugguggacCCGGGGa-- -3'
miRNA:   3'- -CGACGGgCa----GAGGCCGu------------GGCCCCagu -5'
33620 3' -62.8 NC_007605.1 + 155263 0.68 0.546693
Target:  5'- gGCUGCCgGgguccCUCCGGCuggccugguggacCCGGGGa-- -3'
miRNA:   3'- -CGACGGgCa----GAGGCCGu------------GGCCCCagu -5'
33620 3' -62.8 NC_007605.1 + 136849 0.68 0.546693
Target:  5'- gGCUGCCgGgguccCUCCGGCuggccugguggacCCGGGGa-- -3'
miRNA:   3'- -CGACGGgCa----GAGGCCGu------------GGCCCCagu -5'
33620 3' -62.8 NC_007605.1 + 139918 0.68 0.546693
Target:  5'- gGCUGCCgGgguccCUCCGGCuggccugguggacCCGGGGa-- -3'
miRNA:   3'- -CGACGGgCa----GAGGCCGu------------GGCCCCagu -5'
33620 3' -62.8 NC_007605.1 + 146056 0.68 0.546693
Target:  5'- gGCUGCCgGgguccCUCCGGCuggccugguggacCCGGGGa-- -3'
miRNA:   3'- -CGACGGgCa----GAGGCCGu------------GGCCCCagu -5'
33620 3' -62.8 NC_007605.1 + 149125 0.68 0.546693
Target:  5'- gGCUGCCgGgguccCUCCGGCuggccugguggacCCGGGGa-- -3'
miRNA:   3'- -CGACGGgCa----GAGGCCGu------------GGCCCCagu -5'
33620 3' -62.8 NC_007605.1 + 150857 0.68 0.541051
Target:  5'- --gGCCCGcuuucuaccucUCUCCGGCACCccagccuGGUCAg -3'
miRNA:   3'- cgaCGGGC-----------AGAGGCCGUGGcc-----CCAGU- -5'
33620 3' -62.8 NC_007605.1 + 158626 0.68 0.531691
Target:  5'- gGCUGCCgGgguccCUCCGGCuggccugggacCCGGGGa-- -3'
miRNA:   3'- -CGACGGgCa----GAGGCCGu----------GGCCCCagu -5'
33620 3' -62.8 NC_007605.1 + 155557 0.68 0.531691
Target:  5'- gGCUGCCgGgguccCUCCGGCuggccugggacCCGGGGa-- -3'
miRNA:   3'- -CGACGGgCa----GAGGCCGu----------GGCCCCagu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.