miRNA display CGI


Results 21 - 40 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33620 5' -52.1 NC_007605.1 + 112926 0.67 0.96836
Target:  5'- uUCaGUCCCUGGCcGAGgucCUGCacggcaguuacaacgGGGUGGc -3'
miRNA:   3'- -AGaCAGGGACCGuUUU---GACG---------------UCCAUC- -5'
33620 5' -52.1 NC_007605.1 + 119806 0.66 0.981424
Target:  5'- uUCcgGUCCCUGGUggagaccaucucgcuGAAuuuuCUGCAGGa-- -3'
miRNA:   3'- -AGa-CAGGGACCG---------------UUUu---GACGUCCauc -5'
33620 5' -52.1 NC_007605.1 + 122497 0.66 0.984595
Target:  5'- --cGUCCCUGGUAAAAUggugGCugaAGGcUGGc -3'
miRNA:   3'- agaCAGGGACCGUUUUGa---CG---UCC-AUC- -5'
33620 5' -52.1 NC_007605.1 + 124933 0.68 0.943537
Target:  5'- aUCUGUCCgUGGCGcAGCUuCAcGGUGc -3'
miRNA:   3'- -AGACAGGgACCGUuUUGAcGU-CCAUc -5'
33620 5' -52.1 NC_007605.1 + 136505 0.66 0.982666
Target:  5'- ----cCCCUGGaCGGGACUG-GGGUGGa -3'
miRNA:   3'- agacaGGGACC-GUUUUGACgUCCAUC- -5'
33620 5' -52.1 NC_007605.1 + 136681 0.67 0.970201
Target:  5'- gCUGgcgCCCUugccuggaGGCAGAgacugggcgGCUGCAGGgGGg -3'
miRNA:   3'- aGACa--GGGA--------CCGUUU---------UGACGUCCaUC- -5'
33620 5' -52.1 NC_007605.1 + 139574 0.66 0.982666
Target:  5'- ----cCCCUGGaCGGGACUG-GGGUGGa -3'
miRNA:   3'- agacaGGGACC-GUUUUGACgUCCAUC- -5'
33620 5' -52.1 NC_007605.1 + 139749 0.67 0.970201
Target:  5'- gCUGgcgCCCUugccuggaGGCAGAgacugggcgGCUGCAGGgGGg -3'
miRNA:   3'- aGACa--GGGA--------CCGUUU---------UGACGUCCaUC- -5'
33620 5' -52.1 NC_007605.1 + 142643 0.66 0.982666
Target:  5'- ----cCCCUGGaCGGGACUG-GGGUGGa -3'
miRNA:   3'- agacaGGGACC-GUUUUGACgUCCAUC- -5'
33620 5' -52.1 NC_007605.1 + 142818 0.67 0.970201
Target:  5'- gCUGgcgCCCUugccuggaGGCAGAgacugggcgGCUGCAGGgGGg -3'
miRNA:   3'- aGACa--GGGA--------CCGUUU---------UGACGUCCaUC- -5'
33620 5' -52.1 NC_007605.1 + 145711 0.66 0.982666
Target:  5'- ----cCCCUGGaCGGGACUG-GGGUGGa -3'
miRNA:   3'- agacaGGGACC-GUUUUGACgUCCAUC- -5'
33620 5' -52.1 NC_007605.1 + 145887 0.67 0.970201
Target:  5'- gCUGgcgCCCUugccuggaGGCAGAgacugggcgGCUGCAGGgGGg -3'
miRNA:   3'- aGACa--GGGA--------CCGUUU---------UGACGUCCaUC- -5'
33620 5' -52.1 NC_007605.1 + 148533 0.71 0.853918
Target:  5'- -aUGUCCCUgGGCGuuGCUGCAGc--- -3'
miRNA:   3'- agACAGGGA-CCGUuuUGACGUCcauc -5'
33620 5' -52.1 NC_007605.1 + 148780 0.66 0.982666
Target:  5'- ----cCCCUGGaCGGGACUG-GGGUGGa -3'
miRNA:   3'- agacaGGGACC-GUUUUGACgUCCAUC- -5'
33620 5' -52.1 NC_007605.1 + 148956 0.67 0.970201
Target:  5'- gCUGgcgCCCUugccuggaGGCAGAgacugggcgGCUGCAGGgGGg -3'
miRNA:   3'- aGACa--GGGA--------CCGUUU---------UGACGUCCaUC- -5'
33620 5' -52.1 NC_007605.1 + 149679 0.74 0.703472
Target:  5'- cUCUG-CCCgGGCAGAAuCUGCaguagAGGUAGg -3'
miRNA:   3'- -AGACaGGGaCCGUUUU-GACG-----UCCAUC- -5'
33620 5' -52.1 NC_007605.1 + 151849 0.66 0.982666
Target:  5'- ----cCCCUGGaCGGGACUG-GGGUGGa -3'
miRNA:   3'- agacaGGGACC-GUUUUGACgUCCAUC- -5'
33620 5' -52.1 NC_007605.1 + 152025 0.67 0.970201
Target:  5'- gCUGgcgCCCUugccuggaGGCAGAgacugggcgGCUGCAGGgGGg -3'
miRNA:   3'- aGACa--GGGA--------CCGUUU---------UGACGUCCaUC- -5'
33620 5' -52.1 NC_007605.1 + 154918 0.66 0.982666
Target:  5'- ----cCCCUGGaCGGGACUG-GGGUGGa -3'
miRNA:   3'- agacaGGGACC-GUUUUGACgUCCAUC- -5'
33620 5' -52.1 NC_007605.1 + 155094 0.67 0.970201
Target:  5'- gCUGgcgCCCUugccuggaGGCAGAgacugggcgGCUGCAGGgGGg -3'
miRNA:   3'- aGACa--GGGA--------CCGUUU---------UGACGUCCaUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.