Results 41 - 45 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33620 | 5' | -52.1 | NC_007605.1 | + | 157987 | 0.66 | 0.982666 |
Target: 5'- ----cCCCUGGaCGGGACUG-GGGUGGa -3' miRNA: 3'- agacaGGGACC-GUUUUGACgUCCAUC- -5' |
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33620 | 5' | -52.1 | NC_007605.1 | + | 158163 | 0.67 | 0.970201 |
Target: 5'- gCUGgcgCCCUugccuggaGGCAGAgacugggcgGCUGCAGGgGGg -3' miRNA: 3'- aGACa--GGGA--------CCGUUU---------UGACGUCCaUC- -5' |
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33620 | 5' | -52.1 | NC_007605.1 | + | 159392 | 0.68 | 0.943537 |
Target: 5'- cUCUGUUgcgCCaGGCAGGACUGCAGcuUGGc -3' miRNA: 3'- -AGACAG---GGaCCGUUUUGACGUCc-AUC- -5' |
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33620 | 5' | -52.1 | NC_007605.1 | + | 162071 | 0.68 | 0.948067 |
Target: 5'- --cGUCCagguCUGGCAGGuc-GCAGGUGGg -3' miRNA: 3'- agaCAGG----GACCGUUUugaCGUCCAUC- -5' |
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33620 | 5' | -52.1 | NC_007605.1 | + | 162858 | 1.09 | 0.006364 |
Target: 5'- uUCUGUCCCUGGCAAAACUGCAGGUAGu -3' miRNA: 3'- -AGACAGGGACCGUUUUGACGUCCAUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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