miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33620 5' -52.1 NC_007605.1 + 162858 1.09 0.006364
Target:  5'- uUCUGUCCCUGGCAAAACUGCAGGUAGu -3'
miRNA:   3'- -AGACAGGGACCGUUUUGACGUCCAUC- -5'
33620 5' -52.1 NC_007605.1 + 74831 0.66 0.98796
Target:  5'- --cGUCCCUG--AGAGCUGUcguGGGUGGu -3'
miRNA:   3'- agaCAGGGACcgUUUUGACG---UCCAUC- -5'
33620 5' -52.1 NC_007605.1 + 5115 0.66 0.98796
Target:  5'- -gUGgCCUUGGgGGAGCUGgGGGUGc -3'
miRNA:   3'- agACaGGGACCgUUUUGACgUCCAUc -5'
33620 5' -52.1 NC_007605.1 + 59801 0.66 0.986188
Target:  5'- aUCUGUUCCggauuuagguccaUGGCGGGugUGUauguuuuaauagGGGUGGu -3'
miRNA:   3'- -AGACAGGG-------------ACCGUUUugACG------------UCCAUC- -5'
33620 5' -52.1 NC_007605.1 + 58500 0.66 0.986018
Target:  5'- aCUGggcCCCUGGUgcccccacguACUGCAGGa-- -3'
miRNA:   3'- aGACa--GGGACCGuuu-------UGACGUCCauc -5'
33620 5' -52.1 NC_007605.1 + 122497 0.66 0.984595
Target:  5'- --cGUCCCUGGUAAAAUggugGCugaAGGcUGGc -3'
miRNA:   3'- agaCAGGGACCGUUUUGa---CG---UCC-AUC- -5'
33620 5' -52.1 NC_007605.1 + 45078 0.66 0.981424
Target:  5'- -gUGUCCUUGGCGuccgggugggccccgAGGCUcucGCAGaGUGGg -3'
miRNA:   3'- agACAGGGACCGU---------------UUUGA---CGUC-CAUC- -5'
33620 5' -52.1 NC_007605.1 + 72250 0.67 0.975784
Target:  5'- aUUUGUCuUCUGGCAcAGCUGUugccaGGGUGc -3'
miRNA:   3'- -AGACAG-GGACCGUuUUGACG-----UCCAUc -5'
33620 5' -52.1 NC_007605.1 + 39774 0.67 0.975784
Target:  5'- --gGUUCCUGGCGcuccACUGCaccuggaaugcaGGGUGGg -3'
miRNA:   3'- agaCAGGGACCGUuu--UGACG------------UCCAUC- -5'
33620 5' -52.1 NC_007605.1 + 2382 0.67 0.967089
Target:  5'- -gUGUUUggUGGCAGGGCUGCuGGUGGc -3'
miRNA:   3'- agACAGGg-ACCGUUUUGACGuCCAUC- -5'
33620 5' -52.1 NC_007605.1 + 92965 0.78 0.495879
Target:  5'- gCUGUUCCUGGCAAGAgucUUGCAGGc-- -3'
miRNA:   3'- aGACAGGGACCGUUUU---GACGUCCauc -5'
33620 5' -52.1 NC_007605.1 + 149679 0.74 0.703472
Target:  5'- cUCUG-CCCgGGCAGAAuCUGCaguagAGGUAGg -3'
miRNA:   3'- -AGACaGGGaCCGUUUU-GACG-----UCCAUC- -5'
33620 5' -52.1 NC_007605.1 + 148533 0.71 0.853918
Target:  5'- -aUGUCCCUgGGCGuuGCUGCAGc--- -3'
miRNA:   3'- agACAGGGA-CCGUuuUGACGUCcauc -5'
33620 5' -52.1 NC_007605.1 + 74699 0.69 0.928438
Target:  5'- cCUGccCCCUGGUG----UGCAGGUGGg -3'
miRNA:   3'- aGACa-GGGACCGUuuugACGUCCAUC- -5'
33620 5' -52.1 NC_007605.1 + 159392 0.68 0.943537
Target:  5'- cUCUGUUgcgCCaGGCAGGACUGCAGcuUGGc -3'
miRNA:   3'- -AGACAG---GGaCCGUUUUGACGUCc-AUC- -5'
33620 5' -52.1 NC_007605.1 + 85893 0.68 0.948067
Target:  5'- aCUGggaugaaCCCUggGGCAAcaGACUGCGGGgAGg -3'
miRNA:   3'- aGACa------GGGA--CCGUU--UUGACGUCCaUC- -5'
33620 5' -52.1 NC_007605.1 + 162071 0.68 0.948067
Target:  5'- --cGUCCagguCUGGCAGGuc-GCAGGUGGg -3'
miRNA:   3'- agaCAGG----GACCGUUUugaCGUCCAUC- -5'
33620 5' -52.1 NC_007605.1 + 101008 0.66 0.98796
Target:  5'- cUCUGUCuCUUGGCAGcauaUGCGGcaGUAGc -3'
miRNA:   3'- -AGACAG-GGACCGUUuug-ACGUC--CAUC- -5'
33620 5' -52.1 NC_007605.1 + 69706 0.71 0.853918
Target:  5'- gUCUGUCCCUGGaCGuAGGCguacuuucccUGCAGGa-- -3'
miRNA:   3'- -AGACAGGGACC-GU-UUUG----------ACGUCCauc -5'
33620 5' -52.1 NC_007605.1 + 45762 0.7 0.891416
Target:  5'- gUCUGUCCCcGGCcuugcACUGCuGGaUGGa -3'
miRNA:   3'- -AGACAGGGaCCGuuu--UGACGuCC-AUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.