Results 21 - 40 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33620 | 5' | -52.1 | NC_007605.1 | + | 39774 | 0.67 | 0.975784 |
Target: 5'- --gGUUCCUGGCGcuccACUGCaccuggaaugcaGGGUGGg -3' miRNA: 3'- agaCAGGGACCGUuu--UGACG------------UCCAUC- -5' |
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33620 | 5' | -52.1 | NC_007605.1 | + | 155094 | 0.67 | 0.970201 |
Target: 5'- gCUGgcgCCCUugccuggaGGCAGAgacugggcgGCUGCAGGgGGg -3' miRNA: 3'- aGACa--GGGA--------CCGUUU---------UGACGUCCaUC- -5' |
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33620 | 5' | -52.1 | NC_007605.1 | + | 139749 | 0.67 | 0.970201 |
Target: 5'- gCUGgcgCCCUugccuggaGGCAGAgacugggcgGCUGCAGGgGGg -3' miRNA: 3'- aGACa--GGGA--------CCGUUU---------UGACGUCCaUC- -5' |
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33620 | 5' | -52.1 | NC_007605.1 | + | 158163 | 0.67 | 0.970201 |
Target: 5'- gCUGgcgCCCUugccuggaGGCAGAgacugggcgGCUGCAGGgGGg -3' miRNA: 3'- aGACa--GGGA--------CCGUUU---------UGACGUCCaUC- -5' |
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33620 | 5' | -52.1 | NC_007605.1 | + | 152025 | 0.67 | 0.970201 |
Target: 5'- gCUGgcgCCCUugccuggaGGCAGAgacugggcgGCUGCAGGgGGg -3' miRNA: 3'- aGACa--GGGA--------CCGUUU---------UGACGUCCaUC- -5' |
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33620 | 5' | -52.1 | NC_007605.1 | + | 148956 | 0.67 | 0.970201 |
Target: 5'- gCUGgcgCCCUugccuggaGGCAGAgacugggcgGCUGCAGGgGGg -3' miRNA: 3'- aGACa--GGGA--------CCGUUU---------UGACGUCCaUC- -5' |
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33620 | 5' | -52.1 | NC_007605.1 | + | 145887 | 0.67 | 0.970201 |
Target: 5'- gCUGgcgCCCUugccuggaGGCAGAgacugggcgGCUGCAGGgGGg -3' miRNA: 3'- aGACa--GGGA--------CCGUUU---------UGACGUCCaUC- -5' |
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33620 | 5' | -52.1 | NC_007605.1 | + | 142818 | 0.67 | 0.970201 |
Target: 5'- gCUGgcgCCCUugccuggaGGCAGAgacugggcgGCUGCAGGgGGg -3' miRNA: 3'- aGACa--GGGA--------CCGUUU---------UGACGUCCaUC- -5' |
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33620 | 5' | -52.1 | NC_007605.1 | + | 136681 | 0.67 | 0.970201 |
Target: 5'- gCUGgcgCCCUugccuggaGGCAGAgacugggcgGCUGCAGGgGGg -3' miRNA: 3'- aGACa--GGGA--------CCGUUU---------UGACGUCCaUC- -5' |
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33620 | 5' | -52.1 | NC_007605.1 | + | 112926 | 0.67 | 0.96836 |
Target: 5'- uUCaGUCCCUGGCcGAGgucCUGCacggcaguuacaacgGGGUGGc -3' miRNA: 3'- -AGaCAGGGACCGuUUU---GACG---------------UCCAUC- -5' |
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33620 | 5' | -52.1 | NC_007605.1 | + | 2382 | 0.67 | 0.967089 |
Target: 5'- -gUGUUUggUGGCAGGGCUGCuGGUGGc -3' miRNA: 3'- agACAGGg-ACCGUUUUGACGuCCAUC- -5' |
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33620 | 5' | -52.1 | NC_007605.1 | + | 63771 | 0.67 | 0.967089 |
Target: 5'- cUCUGUCuCCUGGUuGAcCUGgAGGaAGa -3' miRNA: 3'- -AGACAG-GGACCGuUUuGACgUCCaUC- -5' |
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33620 | 5' | -52.1 | NC_007605.1 | + | 162071 | 0.68 | 0.948067 |
Target: 5'- --cGUCCagguCUGGCAGGuc-GCAGGUGGg -3' miRNA: 3'- agaCAGG----GACCGUUUugaCGUCCAUC- -5' |
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33620 | 5' | -52.1 | NC_007605.1 | + | 85893 | 0.68 | 0.948067 |
Target: 5'- aCUGggaugaaCCCUggGGCAAcaGACUGCGGGgAGg -3' miRNA: 3'- aGACa------GGGA--CCGUU--UUGACGUCCaUC- -5' |
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33620 | 5' | -52.1 | NC_007605.1 | + | 124933 | 0.68 | 0.943537 |
Target: 5'- aUCUGUCCgUGGCGcAGCUuCAcGGUGc -3' miRNA: 3'- -AGACAGGgACCGUuUUGAcGU-CCAUc -5' |
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33620 | 5' | -52.1 | NC_007605.1 | + | 159392 | 0.68 | 0.943537 |
Target: 5'- cUCUGUUgcgCCaGGCAGGACUGCAGcuUGGc -3' miRNA: 3'- -AGACAG---GGaCCGUUUUGACGUCc-AUC- -5' |
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33620 | 5' | -52.1 | NC_007605.1 | + | 74699 | 0.69 | 0.928438 |
Target: 5'- cCUGccCCCUGGUG----UGCAGGUGGg -3' miRNA: 3'- aGACa-GGGACCGUuuugACGUCCAUC- -5' |
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33620 | 5' | -52.1 | NC_007605.1 | + | 109594 | 0.7 | 0.911056 |
Target: 5'- gCUGcCCCUGGCccGGCgGCGGGcGGu -3' miRNA: 3'- aGACaGGGACCGuuUUGaCGUCCaUC- -5' |
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33620 | 5' | -52.1 | NC_007605.1 | + | 45762 | 0.7 | 0.891416 |
Target: 5'- gUCUGUCCCcGGCcuugcACUGCuGGaUGGa -3' miRNA: 3'- -AGACAGGGaCCGuuu--UGACGuCC-AUC- -5' |
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33620 | 5' | -52.1 | NC_007605.1 | + | 148533 | 0.71 | 0.853918 |
Target: 5'- -aUGUCCCUgGGCGuuGCUGCAGc--- -3' miRNA: 3'- agACAGGGA-CCGUuuUGACGUCcauc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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