miRNA display CGI


Results 41 - 60 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33622 3' -60.1 NC_007605.1 + 720 0.69 0.599782
Target:  5'- uCgUCCuCUGGcUCUCuUCGcCAGGGGGCCu -3'
miRNA:   3'- -GgAGG-GACC-AGAGcGGU-GUCUCCCGG- -5'
33622 3' -60.1 NC_007605.1 + 87794 0.69 0.60955
Target:  5'- gCCUCCUgccgcggGGcCUCcuGCCGCGGggcuccugccgcGGGGCCu -3'
miRNA:   3'- -GGAGGGa------CCaGAG--CGGUGUC------------UCCCGG- -5'
33622 3' -60.1 NC_007605.1 + 17721 0.69 0.613462
Target:  5'- cCCUCCCcGGa--CGCCugGgcgccccucaaccccGAGGGCCa -3'
miRNA:   3'- -GGAGGGaCCagaGCGGugU---------------CUCCCGG- -5'
33622 3' -60.1 NC_007605.1 + 55479 0.69 0.615418
Target:  5'- cCCggCCCUGGUuuccuuuguguuccCUUGCUGCcugaugcuguuuaGGGGGGCCu -3'
miRNA:   3'- -GGa-GGGACCA--------------GAGCGGUG-------------UCUCCCGG- -5'
33622 3' -60.1 NC_007605.1 + 34537 0.69 0.618354
Target:  5'- gCUCCCgccucagggaucgUGGaCUCgGCCACAcagugggcuucGGGGGCCu -3'
miRNA:   3'- gGAGGG-------------ACCaGAG-CGGUGU-----------CUCCCGG- -5'
33622 3' -60.1 NC_007605.1 + 137781 0.69 0.619333
Target:  5'- cCCUgCCUG-UCUCuGCCcccCGGAGGGaCCg -3'
miRNA:   3'- -GGAgGGACcAGAG-CGGu--GUCUCCC-GG- -5'
33622 3' -60.1 NC_007605.1 + 126037 0.69 0.619333
Target:  5'- gUCUCCgCUgcGGUCcagaaGCCAgGGAGGGCa -3'
miRNA:   3'- -GGAGG-GA--CCAGag---CGGUgUCUCCCGg -5'
33622 3' -60.1 NC_007605.1 + 64449 0.69 0.619333
Target:  5'- gCCUCUacgcgGGUCUCagggcaGCCcuGCAGcGGGCCa -3'
miRNA:   3'- -GGAGGga---CCAGAG------CGG--UGUCuCCCGG- -5'
33622 3' -60.1 NC_007605.1 + 159264 0.69 0.619333
Target:  5'- cCCUgCCUG-UCUCuGCCcccCGGAGGGaCCg -3'
miRNA:   3'- -GGAgGGACcAGAG-CGGu--GUCUCCC-GG- -5'
33622 3' -60.1 NC_007605.1 + 140850 0.69 0.619333
Target:  5'- cCCUgCCUG-UCUCuGCCcccCGGAGGGaCCg -3'
miRNA:   3'- -GGAgGGACcAGAG-CGGu--GUCUCCC-GG- -5'
33622 3' -60.1 NC_007605.1 + 143919 0.69 0.619333
Target:  5'- cCCUgCCUG-UCUCuGCCcccCGGAGGGaCCg -3'
miRNA:   3'- -GGAgGGACcAGAG-CGGu--GUCUCCC-GG- -5'
33622 3' -60.1 NC_007605.1 + 146988 0.69 0.619333
Target:  5'- cCCUgCCUG-UCUCuGCCcccCGGAGGGaCCg -3'
miRNA:   3'- -GGAgGGACcAGAG-CGGu--GUCUCCC-GG- -5'
33622 3' -60.1 NC_007605.1 + 150057 0.69 0.619333
Target:  5'- cCCUgCCUG-UCUCuGCCcccCGGAGGGaCCg -3'
miRNA:   3'- -GGAgGGACcAGAG-CGGu--GUCUCCC-GG- -5'
33622 3' -60.1 NC_007605.1 + 153126 0.69 0.619333
Target:  5'- cCCUgCCUG-UCUCuGCCcccCGGAGGGaCCg -3'
miRNA:   3'- -GGAgGGACcAGAG-CGGu--GUCUCCC-GG- -5'
33622 3' -60.1 NC_007605.1 + 156195 0.69 0.619333
Target:  5'- cCCUgCCUG-UCUCuGCCcccCGGAGGGaCCg -3'
miRNA:   3'- -GGAgGGACcAGAG-CGGu--GUCUCCC-GG- -5'
33622 3' -60.1 NC_007605.1 + 129105 0.69 0.629124
Target:  5'- gCCg-CCUGGUCcagcgUUGCCuccUGGGGGGCCa -3'
miRNA:   3'- -GGagGGACCAG-----AGCGGu--GUCUCCCGG- -5'
33622 3' -60.1 NC_007605.1 + 60464 0.69 0.638918
Target:  5'- cCCUCCC-GGUCUCuGCgucgUACAGGagcGGGCg -3'
miRNA:   3'- -GGAGGGaCCAGAG-CG----GUGUCU---CCCGg -5'
33622 3' -60.1 NC_007605.1 + 11806 0.68 0.658484
Target:  5'- gCCUCUCUGcccuGUUugcccgggagcgUCGCCuggcccugguGCGGGGGGCCu -3'
miRNA:   3'- -GGAGGGAC----CAG------------AGCGG----------UGUCUCCCGG- -5'
33622 3' -60.1 NC_007605.1 + 37297 0.68 0.668242
Target:  5'- --gCCUgggGGUCUgcCGCCACcGuGGGCCu -3'
miRNA:   3'- ggaGGGa--CCAGA--GCGGUGuCuCCCGG- -5'
33622 3' -60.1 NC_007605.1 + 156219 0.68 0.681856
Target:  5'- -gUCCCUGGcugccugcaaugcucUgCUgGCCACuGAGGGUCc -3'
miRNA:   3'- ggAGGGACC---------------A-GAgCGGUGuCUCCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.