miRNA display CGI


Results 61 - 80 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33622 3' -60.1 NC_007605.1 + 156219 0.68 0.681856
Target:  5'- -gUCCCUGGcugccugcaaugcucUgCUgGCCACuGAGGGUCc -3'
miRNA:   3'- ggAGGGACC---------------A-GAgCGGUGuCUCCCGG- -5'
33622 3' -60.1 NC_007605.1 + 61214 0.68 0.683795
Target:  5'- uCUUCCCUG--CUCGCCggggaguaggggggGCuuacaggGGAGGGCCg -3'
miRNA:   3'- -GGAGGGACcaGAGCGG--------------UG-------UCUCCCGG- -5'
33622 3' -60.1 NC_007605.1 + 45586 0.68 0.684764
Target:  5'- cCCUCCCUGGcuUCUgGaCCGCAGcGGagacagcuccugguGCCc -3'
miRNA:   3'- -GGAGGGACC--AGAgC-GGUGUCuCC--------------CGG- -5'
33622 3' -60.1 NC_007605.1 + 13149 0.68 0.684764
Target:  5'- -gUCCCUcGUUUgGCacgcgggagaaucaCACGGAGGGCCu -3'
miRNA:   3'- ggAGGGAcCAGAgCG--------------GUGUCUCCCGG- -5'
33622 3' -60.1 NC_007605.1 + 16457 0.67 0.706927
Target:  5'- gCCUCCCcaccgGGUCcaUCagGCCGgcCGGAGGGaCCc -3'
miRNA:   3'- -GGAGGGa----CCAG--AG--CGGU--GUCUCCC-GG- -5'
33622 3' -60.1 NC_007605.1 + 19526 0.67 0.706927
Target:  5'- gCCUCCCcaccgGGUCcaUCagGCCGgcCGGAGGGaCCc -3'
miRNA:   3'- -GGAGGGa----CCAG--AG--CGGU--GUCUCCC-GG- -5'
33622 3' -60.1 NC_007605.1 + 13388 0.67 0.706927
Target:  5'- gCCUCCCcaccgGGUCcaUCagGCCGgcCGGAGGGaCCc -3'
miRNA:   3'- -GGAGGGa----CCAG--AG--CGGU--GUCUCCC-GG- -5'
33622 3' -60.1 NC_007605.1 + 22595 0.67 0.706927
Target:  5'- gCCUCCCcaccgGGUCcaUCagGCCGgcCGGAGGGaCCc -3'
miRNA:   3'- -GGAGGGa----CCAG--AG--CGGU--GUCUCCC-GG- -5'
33622 3' -60.1 NC_007605.1 + 25664 0.67 0.706927
Target:  5'- gCCUCCCcaccgGGUCcaUCagGCCGgcCGGAGGGaCCc -3'
miRNA:   3'- -GGAGGGa----CCAG--AG--CGGU--GUCUCCC-GG- -5'
33622 3' -60.1 NC_007605.1 + 28733 0.67 0.706927
Target:  5'- gCCUCCCcaccgGGUCcaUCagGCCGgcCGGAGGGaCCc -3'
miRNA:   3'- -GGAGGGa----CCAG--AG--CGGU--GUCUCCC-GG- -5'
33622 3' -60.1 NC_007605.1 + 31802 0.67 0.706927
Target:  5'- gCCUCCCcaccgGGUCcaUCagGCCGgcCGGAGGGaCCc -3'
miRNA:   3'- -GGAGGGa----CCAG--AG--CGGU--GUCUCCC-GG- -5'
33622 3' -60.1 NC_007605.1 + 34871 0.67 0.706927
Target:  5'- gCCUCCCcaccgGGUCcaUCagGCCGgcCGGAGGGaCCc -3'
miRNA:   3'- -GGAGGGa----CCAG--AG--CGGU--GUCUCCC-GG- -5'
33622 3' -60.1 NC_007605.1 + 50598 0.67 0.715522
Target:  5'- uUCUCCCgGGUCgaaCGCUggaguaGCGGAGGcugcugcGCCg -3'
miRNA:   3'- -GGAGGGaCCAGa--GCGG------UGUCUCC-------CGG- -5'
33622 3' -60.1 NC_007605.1 + 68939 0.67 0.716474
Target:  5'- uCCUCUggacgCUGGUaccCGCCAagcacgcgguGAGGGCCg -3'
miRNA:   3'- -GGAGG-----GACCAga-GCGGUgu--------CUCCCGG- -5'
33622 3' -60.1 NC_007605.1 + 165786 0.67 0.716474
Target:  5'- uCCgCCCaGGUCUUGCCAauuGGGGUg -3'
miRNA:   3'- -GGaGGGaCCAGAGCGGUgucUCCCGg -5'
33622 3' -60.1 NC_007605.1 + 87749 0.67 0.725954
Target:  5'- gCCUCCUgccguggGGcCUCcuGCCGC--GGGGCCu -3'
miRNA:   3'- -GGAGGGa------CCaGAG--CGGUGucUCCCGG- -5'
33622 3' -60.1 NC_007605.1 + 3981 0.67 0.725954
Target:  5'- aUCUacaCCUGGUCcgCGCCggGCAGAcaacucGGCCg -3'
miRNA:   3'- -GGAg--GGACCAGa-GCGG--UGUCUc-----CCGG- -5'
33622 3' -60.1 NC_007605.1 + 54509 0.67 0.73536
Target:  5'- uCCUCCUucuuUGG-CgguaGCCGCGGGgguggcGGGCCa -3'
miRNA:   3'- -GGAGGG----ACCaGag--CGGUGUCU------CCCGG- -5'
33622 3' -60.1 NC_007605.1 + 66050 0.67 0.73536
Target:  5'- cCCUCCUgGGcCUCGaCgCGCGGucAGGGCa -3'
miRNA:   3'- -GGAGGGaCCaGAGC-G-GUGUC--UCCCGg -5'
33622 3' -60.1 NC_007605.1 + 75160 0.67 0.744684
Target:  5'- gCCUCCCgUGGUgCggcaGCCGgAGcacucuGGGCCc -3'
miRNA:   3'- -GGAGGG-ACCA-Gag--CGGUgUCu-----CCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.