Results 101 - 116 of 116 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33622 | 3' | -60.1 | NC_007605.1 | + | 28331 | 0.72 | 0.441437 |
Target: 5'- gCCUCCCcgGGUCccagGCCAgcCGGAGGGaCCc -3' miRNA: 3'- -GGAGGGa-CCAGag--CGGU--GUCUCCC-GG- -5' |
|||||||
33622 | 3' | -60.1 | NC_007605.1 | + | 31400 | 0.72 | 0.441437 |
Target: 5'- gCCUCCCcgGGUCccagGCCAgcCGGAGGGaCCc -3' miRNA: 3'- -GGAGGGa-CCAGag--CGGU--GUCUCCC-GG- -5' |
|||||||
33622 | 3' | -60.1 | NC_007605.1 | + | 25262 | 0.72 | 0.441437 |
Target: 5'- gCCUCCCcgGGUCccagGCCAgcCGGAGGGaCCc -3' miRNA: 3'- -GGAGGGa-CCAGag--CGGU--GUCUCCC-GG- -5' |
|||||||
33622 | 3' | -60.1 | NC_007605.1 | + | 34469 | 0.72 | 0.441437 |
Target: 5'- gCCUCCCcgGGUCccagGCCAgcCGGAGGGaCCc -3' miRNA: 3'- -GGAGGGa-CCAGag--CGGU--GUCUCCC-GG- -5' |
|||||||
33622 | 3' | -60.1 | NC_007605.1 | + | 12986 | 0.72 | 0.441437 |
Target: 5'- gCCUCCCcgGGUCccagGCCAgcCGGAGGGaCCc -3' miRNA: 3'- -GGAGGGa-CCAGag--CGGU--GUCUCCC-GG- -5' |
|||||||
33622 | 3' | -60.1 | NC_007605.1 | + | 83298 | 0.74 | 0.344999 |
Target: 5'- -aUCCCUGGUauggaGCCugGG-GGGCCg -3' miRNA: 3'- ggAGGGACCAgag--CGGugUCuCCCGG- -5' |
|||||||
33622 | 3' | -60.1 | NC_007605.1 | + | 83259 | 0.75 | 0.289616 |
Target: 5'- -aUCCCUGGUauggaGCCugGGGGGGCg -3' miRNA: 3'- ggAGGGACCAgag--CGGugUCUCCCGg -5' |
|||||||
33622 | 3' | -60.1 | NC_007605.1 | + | 32889 | 0.77 | 0.247089 |
Target: 5'- cCCUCCCUcGUCUUGCCcuGCGcccGGGGCCa -3' miRNA: 3'- -GGAGGGAcCAGAGCGG--UGUc--UCCCGG- -5' |
|||||||
33622 | 3' | -60.1 | NC_007605.1 | + | 14475 | 0.77 | 0.247089 |
Target: 5'- cCCUCCCUcGUCUUGCCcuGCGcccGGGGCCa -3' miRNA: 3'- -GGAGGGAcCAGAGCGG--UGUc--UCCCGG- -5' |
|||||||
33622 | 3' | -60.1 | NC_007605.1 | + | 17544 | 0.77 | 0.247089 |
Target: 5'- cCCUCCCUcGUCUUGCCcuGCGcccGGGGCCa -3' miRNA: 3'- -GGAGGGAcCAGAGCGG--UGUc--UCCCGG- -5' |
|||||||
33622 | 3' | -60.1 | NC_007605.1 | + | 20613 | 0.77 | 0.247089 |
Target: 5'- cCCUCCCUcGUCUUGCCcuGCGcccGGGGCCa -3' miRNA: 3'- -GGAGGGAcCAGAGCGG--UGUc--UCCCGG- -5' |
|||||||
33622 | 3' | -60.1 | NC_007605.1 | + | 23682 | 0.77 | 0.247089 |
Target: 5'- cCCUCCCUcGUCUUGCCcuGCGcccGGGGCCa -3' miRNA: 3'- -GGAGGGAcCAGAGCGG--UGUc--UCCCGG- -5' |
|||||||
33622 | 3' | -60.1 | NC_007605.1 | + | 29820 | 0.77 | 0.247089 |
Target: 5'- cCCUCCCUcGUCUUGCCcuGCGcccGGGGCCa -3' miRNA: 3'- -GGAGGGAcCAGAGCGG--UGUc--UCCCGG- -5' |
|||||||
33622 | 3' | -60.1 | NC_007605.1 | + | 26751 | 0.77 | 0.247089 |
Target: 5'- cCCUCCCUcGUCUUGCCcuGCGcccGGGGCCa -3' miRNA: 3'- -GGAGGGAcCAGAGCGG--UGUc--UCCCGG- -5' |
|||||||
33622 | 3' | -60.1 | NC_007605.1 | + | 97382 | 0.78 | 0.213359 |
Target: 5'- gCCUCCCUGGUuuccacCUaugguggaaggggcUGCCGCGGAGGGUg -3' miRNA: 3'- -GGAGGGACCA------GA--------------GCGGUGUCUCCCGg -5' |
|||||||
33622 | 3' | -60.1 | NC_007605.1 | + | 163796 | 1.13 | 0.000855 |
Target: 5'- aCCUCCCUGGUCUCGCCACAGAGGGCCu -3' miRNA: 3'- -GGAGGGACCAGAGCGGUGUCUCCCGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home