miRNA display CGI


Results 41 - 60 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33622 3' -60.1 NC_007605.1 + 27463 0.66 0.763053
Target:  5'- uCCUCCCccGGUC---CC-CAGuAGGGCCg -3'
miRNA:   3'- -GGAGGGa-CCAGagcGGuGUC-UCCCGG- -5'
33622 3' -60.1 NC_007605.1 + 28331 0.72 0.441437
Target:  5'- gCCUCCCcgGGUCccagGCCAgcCGGAGGGaCCc -3'
miRNA:   3'- -GGAGGGa-CCAGag--CGGU--GUCUCCC-GG- -5'
33622 3' -60.1 NC_007605.1 + 28623 0.71 0.522922
Target:  5'- gCCUCCCcgGGUCcaccagGCCAgcCGGAGGGaCCc -3'
miRNA:   3'- -GGAGGGa-CCAGag----CGGU--GUCUCCC-GG- -5'
33622 3' -60.1 NC_007605.1 + 28733 0.67 0.706927
Target:  5'- gCCUCCCcaccgGGUCcaUCagGCCGgcCGGAGGGaCCc -3'
miRNA:   3'- -GGAGGGa----CCAG--AG--CGGU--GUCUCCC-GG- -5'
33622 3' -60.1 NC_007605.1 + 29820 0.77 0.247089
Target:  5'- cCCUCCCUcGUCUUGCCcuGCGcccGGGGCCa -3'
miRNA:   3'- -GGAGGGAcCAGAGCGG--UGUc--UCCCGG- -5'
33622 3' -60.1 NC_007605.1 + 30532 0.66 0.763053
Target:  5'- uCCUCCCccGGUC---CC-CAGuAGGGCCg -3'
miRNA:   3'- -GGAGGGa-CCAGagcGGuGUC-UCCCGG- -5'
33622 3' -60.1 NC_007605.1 + 31400 0.72 0.441437
Target:  5'- gCCUCCCcgGGUCccagGCCAgcCGGAGGGaCCc -3'
miRNA:   3'- -GGAGGGa-CCAGag--CGGU--GUCUCCC-GG- -5'
33622 3' -60.1 NC_007605.1 + 31692 0.71 0.522922
Target:  5'- gCCUCCCcgGGUCcaccagGCCAgcCGGAGGGaCCc -3'
miRNA:   3'- -GGAGGGa-CCAGag----CGGU--GUCUCCC-GG- -5'
33622 3' -60.1 NC_007605.1 + 31802 0.67 0.706927
Target:  5'- gCCUCCCcaccgGGUCcaUCagGCCGgcCGGAGGGaCCc -3'
miRNA:   3'- -GGAGGGa----CCAG--AG--CGGU--GUCUCCC-GG- -5'
33622 3' -60.1 NC_007605.1 + 32889 0.77 0.247089
Target:  5'- cCCUCCCUcGUCUUGCCcuGCGcccGGGGCCa -3'
miRNA:   3'- -GGAGGGAcCAGAGCGG--UGUc--UCCCGG- -5'
33622 3' -60.1 NC_007605.1 + 33601 0.66 0.763053
Target:  5'- uCCUCCCccGGUC---CC-CAGuAGGGCCg -3'
miRNA:   3'- -GGAGGGa-CCAGagcGGuGUC-UCCCGG- -5'
33622 3' -60.1 NC_007605.1 + 34469 0.72 0.441437
Target:  5'- gCCUCCCcgGGUCccagGCCAgcCGGAGGGaCCc -3'
miRNA:   3'- -GGAGGGa-CCAGag--CGGU--GUCUCCC-GG- -5'
33622 3' -60.1 NC_007605.1 + 34537 0.69 0.618354
Target:  5'- gCUCCCgccucagggaucgUGGaCUCgGCCACAcagugggcuucGGGGGCCu -3'
miRNA:   3'- gGAGGG-------------ACCaGAG-CGGUGU-----------CUCCCGG- -5'
33622 3' -60.1 NC_007605.1 + 34761 0.71 0.522922
Target:  5'- gCCUCCCcgGGUCcaccagGCCAgcCGGAGGGaCCc -3'
miRNA:   3'- -GGAGGGa-CCAGag----CGGU--GUCUCCC-GG- -5'
33622 3' -60.1 NC_007605.1 + 34871 0.67 0.706927
Target:  5'- gCCUCCCcaccgGGUCcaUCagGCCGgcCGGAGGGaCCc -3'
miRNA:   3'- -GGAGGGa----CCAG--AG--CGGU--GUCUCCC-GG- -5'
33622 3' -60.1 NC_007605.1 + 37297 0.68 0.668242
Target:  5'- --gCCUgggGGUCUgcCGCCACcGuGGGCCu -3'
miRNA:   3'- ggaGGGa--CCAGA--GCGGUGuCuCCCGG- -5'
33622 3' -60.1 NC_007605.1 + 45201 0.66 0.789789
Target:  5'- gCCUCC--GGUCUgGUgAUGGccAGGGCCa -3'
miRNA:   3'- -GGAGGgaCCAGAgCGgUGUC--UCCCGG- -5'
33622 3' -60.1 NC_007605.1 + 45586 0.68 0.684764
Target:  5'- cCCUCCCUGGcuUCUgGaCCGCAGcGGagacagcuccugguGCCc -3'
miRNA:   3'- -GGAGGGACC--AGAgC-GGUGUCuCC--------------CGG- -5'
33622 3' -60.1 NC_007605.1 + 50598 0.67 0.715522
Target:  5'- uUCUCCCgGGUCgaaCGCUggaguaGCGGAGGcugcugcGCCg -3'
miRNA:   3'- -GGAGGGaCCAGa--GCGG------UGUCUCC-------CGG- -5'
33622 3' -60.1 NC_007605.1 + 50670 0.66 0.789789
Target:  5'- cCCgacggCCgUGGggaggCggGUgGCGGAGGGCCg -3'
miRNA:   3'- -GGa----GGgACCa----GagCGgUGUCUCCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.