miRNA display CGI


Results 61 - 80 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33622 3' -60.1 NC_007605.1 + 51251 0.66 0.772082
Target:  5'- -gUCCCUGGgCcUGCCA---GGGGCCa -3'
miRNA:   3'- ggAGGGACCaGaGCGGUgucUCCCGG- -5'
33622 3' -60.1 NC_007605.1 + 52931 0.66 0.806976
Target:  5'- uCCUCuCUUGGUCaUC-CUGCGGGGGaCCa -3'
miRNA:   3'- -GGAG-GGACCAG-AGcGGUGUCUCCcGG- -5'
33622 3' -60.1 NC_007605.1 + 54509 0.67 0.73536
Target:  5'- uCCUCCUucuuUGG-CgguaGCCGCGGGgguggcGGGCCa -3'
miRNA:   3'- -GGAGGG----ACCaGag--CGGUGUCU------CCCGG- -5'
33622 3' -60.1 NC_007605.1 + 55479 0.69 0.615418
Target:  5'- cCCggCCCUGGUuuccuuuguguuccCUUGCUGCcugaugcuguuuaGGGGGGCCu -3'
miRNA:   3'- -GGa-GGGACCA--------------GAGCGGUG-------------UCUCCCGG- -5'
33622 3' -60.1 NC_007605.1 + 55912 0.66 0.772082
Target:  5'- uCCUCCUcaa-CUCGCUcCAG-GGGCCa -3'
miRNA:   3'- -GGAGGGaccaGAGCGGuGUCuCCCGG- -5'
33622 3' -60.1 NC_007605.1 + 59035 0.66 0.772082
Target:  5'- ---gCCUGGUUgcacgaggccgUGCCuaggauGCGGAGGGCCg -3'
miRNA:   3'- ggagGGACCAGa----------GCGG------UGUCUCCCGG- -5'
33622 3' -60.1 NC_007605.1 + 59570 0.7 0.57935
Target:  5'- aCCUCCCUGGUgccugaagacccaCUC-CCuuGGAuguGGGCCc -3'
miRNA:   3'- -GGAGGGACCA-------------GAGcGGugUCU---CCCGG- -5'
33622 3' -60.1 NC_007605.1 + 60464 0.69 0.638918
Target:  5'- cCCUCCC-GGUCUCuGCgucgUACAGGagcGGGCg -3'
miRNA:   3'- -GGAGGGaCCAGAG-CG----GUGUCU---CCCGg -5'
33622 3' -60.1 NC_007605.1 + 61214 0.68 0.683795
Target:  5'- uCUUCCCUG--CUCGCCggggaguaggggggGCuuacaggGGAGGGCCg -3'
miRNA:   3'- -GGAGGGACcaGAGCGG--------------UG-------UCUCCCGG- -5'
33622 3' -60.1 NC_007605.1 + 64449 0.69 0.619333
Target:  5'- gCCUCUacgcgGGUCUCagggcaGCCcuGCAGcGGGCCa -3'
miRNA:   3'- -GGAGGga---CCAGAG------CGG--UGUCuCCCGG- -5'
33622 3' -60.1 NC_007605.1 + 66050 0.67 0.73536
Target:  5'- cCCUCCUgGGcCUCGaCgCGCGGucAGGGCa -3'
miRNA:   3'- -GGAGGGaCCaGAGC-G-GUGUC--UCCCGg -5'
33622 3' -60.1 NC_007605.1 + 66289 0.66 0.806976
Target:  5'- gCC-CCCgUGGgaaCGCCugaugGCGGAGGGCa -3'
miRNA:   3'- -GGaGGG-ACCagaGCGG-----UGUCUCCCGg -5'
33622 3' -60.1 NC_007605.1 + 67013 0.66 0.798452
Target:  5'- ---gCCUGG-CUUcagcgGCUGCGGAGGGCUg -3'
miRNA:   3'- ggagGGACCaGAG-----CGGUGUCUCCCGG- -5'
33622 3' -60.1 NC_007605.1 + 68939 0.67 0.716474
Target:  5'- uCCUCUggacgCUGGUaccCGCCAagcacgcgguGAGGGCCg -3'
miRNA:   3'- -GGAGG-----GACCAga-GCGGUgu--------CUCCCGG- -5'
33622 3' -60.1 NC_007605.1 + 75160 0.67 0.744684
Target:  5'- gCCUCCCgUGGUgCggcaGCCGgAGcacucuGGGCCc -3'
miRNA:   3'- -GGAGGG-ACCA-Gag--CGGUgUCu-----CCCGG- -5'
33622 3' -60.1 NC_007605.1 + 78088 0.71 0.513555
Target:  5'- gCCaUCCUGGgauauuaUCcaGCUGCAGAGGGCCu -3'
miRNA:   3'- -GGaGGGACCag-----AG--CGGUGUCUCCCGG- -5'
33622 3' -60.1 NC_007605.1 + 83259 0.75 0.289616
Target:  5'- -aUCCCUGGUauggaGCCugGGGGGGCg -3'
miRNA:   3'- ggAGGGACCAgag--CGGugUCUCCCGg -5'
33622 3' -60.1 NC_007605.1 + 83298 0.74 0.344999
Target:  5'- -aUCCCUGGUauggaGCCugGG-GGGCCg -3'
miRNA:   3'- ggAGGGACCAgag--CGGugUCuCCCGG- -5'
33622 3' -60.1 NC_007605.1 + 87749 0.67 0.725954
Target:  5'- gCCUCCUgccguggGGcCUCcuGCCGC--GGGGCCu -3'
miRNA:   3'- -GGAGGGa------CCaGAG--CGGUGucUCCCGG- -5'
33622 3' -60.1 NC_007605.1 + 87794 0.69 0.60955
Target:  5'- gCCUCCUgccgcggGGcCUCcuGCCGCGGggcuccugccgcGGGGCCu -3'
miRNA:   3'- -GGAGGGa------CCaGAG--CGGUGUC------------UCCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.