miRNA display CGI


Results 81 - 100 of 116 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33622 3' -60.1 NC_007605.1 + 89057 0.66 0.798452
Target:  5'- cCCUCCUcuUGaaCagGCCACucGGGGGCCu -3'
miRNA:   3'- -GGAGGG--ACcaGagCGGUGu-CUCCCGG- -5'
33622 3' -60.1 NC_007605.1 + 97382 0.78 0.213359
Target:  5'- gCCUCCCUGGUuuccacCUaugguggaaggggcUGCCGCGGAGGGUg -3'
miRNA:   3'- -GGAGGGACCA------GA--------------GCGGUGUCUCCCGg -5'
33622 3' -60.1 NC_007605.1 + 102653 0.66 0.763053
Target:  5'- cCCUCUCaaGGccaUCguggGCCACGGGGGGCg -3'
miRNA:   3'- -GGAGGGa-CC---AGag--CGGUGUCUCCCGg -5'
33622 3' -60.1 NC_007605.1 + 104685 0.66 0.763053
Target:  5'- gUCUCCg-GGUCagGUCGCGGAccaGGGUCa -3'
miRNA:   3'- -GGAGGgaCCAGagCGGUGUCU---CCCGG- -5'
33622 3' -60.1 NC_007605.1 + 104743 0.7 0.57935
Target:  5'- gUCUgCCUcgGGUCUCGCCGCuAGuugguccAGGGUCc -3'
miRNA:   3'- -GGAgGGA--CCAGAGCGGUG-UC-------UCCCGG- -5'
33622 3' -60.1 NC_007605.1 + 105978 0.69 0.593932
Target:  5'- aUCUUCCUGGUgUgaaGuCCaaucagacuacugguGCAGAGGGCCg -3'
miRNA:   3'- -GGAGGGACCAgAg--C-GG---------------UGUCUCCCGG- -5'
33622 3' -60.1 NC_007605.1 + 107082 0.69 0.590037
Target:  5'- aCCUCUCggccugGGUCUCG--GCAGuGGGCUc -3'
miRNA:   3'- -GGAGGGa-----CCAGAGCggUGUCuCCCGG- -5'
33622 3' -60.1 NC_007605.1 + 115313 0.66 0.804434
Target:  5'- gCCgCCUUGGUCUCggccccggcccuaaGUCugAGccccaggcaaAGGGCCg -3'
miRNA:   3'- -GGaGGGACCAGAG--------------CGGugUC----------UCCCGG- -5'
33622 3' -60.1 NC_007605.1 + 120574 0.66 0.798452
Target:  5'- gCUCCC-GGUCccaUGCCACuGGAaaaaGGGCUg -3'
miRNA:   3'- gGAGGGaCCAGa--GCGGUG-UCU----CCCGG- -5'
33622 3' -60.1 NC_007605.1 + 123576 0.7 0.571603
Target:  5'- gCCUCCUguguugcagggaguaGGUCUCGCgccugucuCGCGGggccGGGGCCg -3'
miRNA:   3'- -GGAGGGa--------------CCAGAGCG--------GUGUC----UCCCGG- -5'
33622 3' -60.1 NC_007605.1 + 126037 0.69 0.619333
Target:  5'- gUCUCCgCUgcGGUCcagaaGCCAgGGAGGGCa -3'
miRNA:   3'- -GGAGG-GA--CCAGag---CGGUgUCUCCCGg -5'
33622 3' -60.1 NC_007605.1 + 129105 0.69 0.629124
Target:  5'- gCCg-CCUGGUCcagcgUUGCCuccUGGGGGGCCa -3'
miRNA:   3'- -GGagGGACCAG-----AGCGGu--GUCUCCCGG- -5'
33622 3' -60.1 NC_007605.1 + 131335 0.68 0.681856
Target:  5'- gCCgggcCCCUGGUggCUCgGCCGCGGuccucccccgugaacGGGGCg -3'
miRNA:   3'- -GGa---GGGACCA--GAG-CGGUGUC---------------UCCCGg -5'
33622 3' -60.1 NC_007605.1 + 132199 0.71 0.485887
Target:  5'- cUCUCCCcagacaguccGGUCggaGCCAUcaaGGGGGGCCa -3'
miRNA:   3'- -GGAGGGa---------CCAGag-CGGUG---UCUCCCGG- -5'
33622 3' -60.1 NC_007605.1 + 132379 0.66 0.789789
Target:  5'- uCCUCCUgacauUUUCGCCAgccgcCGGGcGGGCCg -3'
miRNA:   3'- -GGAGGGacc--AGAGCGGU-----GUCU-CCCGG- -5'
33622 3' -60.1 NC_007605.1 + 137781 0.69 0.619333
Target:  5'- cCCUgCCUG-UCUCuGCCcccCGGAGGGaCCg -3'
miRNA:   3'- -GGAgGGACcAGAG-CGGu--GUCUCCC-GG- -5'
33622 3' -60.1 NC_007605.1 + 140850 0.69 0.619333
Target:  5'- cCCUgCCUG-UCUCuGCCcccCGGAGGGaCCg -3'
miRNA:   3'- -GGAgGGACcAGAG-CGGu--GUCUCCC-GG- -5'
33622 3' -60.1 NC_007605.1 + 143919 0.69 0.619333
Target:  5'- cCCUgCCUG-UCUCuGCCcccCGGAGGGaCCg -3'
miRNA:   3'- -GGAgGGACcAGAG-CGGu--GUCUCCC-GG- -5'
33622 3' -60.1 NC_007605.1 + 144276 0.66 0.789789
Target:  5'- aCCUCCCaaGGUCUCucacccuggGUaCACAGguGGGGCg -3'
miRNA:   3'- -GGAGGGa-CCAGAG---------CG-GUGUC--UCCCGg -5'
33622 3' -60.1 NC_007605.1 + 145540 0.66 0.789789
Target:  5'- cCCUCCCcuuaacagggGGUCUCGC----GGGGuGCCa -3'
miRNA:   3'- -GGAGGGa---------CCAGAGCGguguCUCC-CGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.