Results 41 - 60 of 116 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33622 | 3' | -60.1 | NC_007605.1 | + | 78088 | 0.71 | 0.513555 |
Target: 5'- gCCaUCCUGGgauauuaUCcaGCUGCAGAGGGCCu -3' miRNA: 3'- -GGaGGGACCag-----AG--CGGUGUCUCCCGG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 75160 | 0.67 | 0.744684 |
Target: 5'- gCCUCCCgUGGUgCggcaGCCGgAGcacucuGGGCCc -3' miRNA: 3'- -GGAGGG-ACCA-Gag--CGGUgUCu-----CCCGG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 68939 | 0.67 | 0.716474 |
Target: 5'- uCCUCUggacgCUGGUaccCGCCAagcacgcgguGAGGGCCg -3' miRNA: 3'- -GGAGG-----GACCAga-GCGGUgu--------CUCCCGG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 67013 | 0.66 | 0.798452 |
Target: 5'- ---gCCUGG-CUUcagcgGCUGCGGAGGGCUg -3' miRNA: 3'- ggagGGACCaGAG-----CGGUGUCUCCCGG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 66289 | 0.66 | 0.806976 |
Target: 5'- gCC-CCCgUGGgaaCGCCugaugGCGGAGGGCa -3' miRNA: 3'- -GGaGGG-ACCagaGCGG-----UGUCUCCCGg -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 66050 | 0.67 | 0.73536 |
Target: 5'- cCCUCCUgGGcCUCGaCgCGCGGucAGGGCa -3' miRNA: 3'- -GGAGGGaCCaGAGC-G-GUGUC--UCCCGg -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 64449 | 0.69 | 0.619333 |
Target: 5'- gCCUCUacgcgGGUCUCagggcaGCCcuGCAGcGGGCCa -3' miRNA: 3'- -GGAGGga---CCAGAG------CGG--UGUCuCCCGG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 61214 | 0.68 | 0.683795 |
Target: 5'- uCUUCCCUG--CUCGCCggggaguaggggggGCuuacaggGGAGGGCCg -3' miRNA: 3'- -GGAGGGACcaGAGCGG--------------UG-------UCUCCCGG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 60464 | 0.69 | 0.638918 |
Target: 5'- cCCUCCC-GGUCUCuGCgucgUACAGGagcGGGCg -3' miRNA: 3'- -GGAGGGaCCAGAG-CG----GUGUCU---CCCGg -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 59570 | 0.7 | 0.57935 |
Target: 5'- aCCUCCCUGGUgccugaagacccaCUC-CCuuGGAuguGGGCCc -3' miRNA: 3'- -GGAGGGACCA-------------GAGcGGugUCU---CCCGG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 59035 | 0.66 | 0.772082 |
Target: 5'- ---gCCUGGUUgcacgaggccgUGCCuaggauGCGGAGGGCCg -3' miRNA: 3'- ggagGGACCAGa----------GCGG------UGUCUCCCGG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 55912 | 0.66 | 0.772082 |
Target: 5'- uCCUCCUcaa-CUCGCUcCAG-GGGCCa -3' miRNA: 3'- -GGAGGGaccaGAGCGGuGUCuCCCGG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 55479 | 0.69 | 0.615418 |
Target: 5'- cCCggCCCUGGUuuccuuuguguuccCUUGCUGCcugaugcuguuuaGGGGGGCCu -3' miRNA: 3'- -GGa-GGGACCA--------------GAGCGGUG-------------UCUCCCGG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 54509 | 0.67 | 0.73536 |
Target: 5'- uCCUCCUucuuUGG-CgguaGCCGCGGGgguggcGGGCCa -3' miRNA: 3'- -GGAGGG----ACCaGag--CGGUGUCU------CCCGG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 52931 | 0.66 | 0.806976 |
Target: 5'- uCCUCuCUUGGUCaUC-CUGCGGGGGaCCa -3' miRNA: 3'- -GGAG-GGACCAG-AGcGGUGUCUCCcGG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 51251 | 0.66 | 0.772082 |
Target: 5'- -gUCCCUGGgCcUGCCA---GGGGCCa -3' miRNA: 3'- ggAGGGACCaGaGCGGUgucUCCCGG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 50670 | 0.66 | 0.789789 |
Target: 5'- cCCgacggCCgUGGggaggCggGUgGCGGAGGGCCg -3' miRNA: 3'- -GGa----GGgACCa----GagCGgUGUCUCCCGG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 50598 | 0.67 | 0.715522 |
Target: 5'- uUCUCCCgGGUCgaaCGCUggaguaGCGGAGGcugcugcGCCg -3' miRNA: 3'- -GGAGGGaCCAGa--GCGG------UGUCUCC-------CGG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 45586 | 0.68 | 0.684764 |
Target: 5'- cCCUCCCUGGcuUCUgGaCCGCAGcGGagacagcuccugguGCCc -3' miRNA: 3'- -GGAGGGACC--AGAgC-GGUGUCuCC--------------CGG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 45201 | 0.66 | 0.789789 |
Target: 5'- gCCUCC--GGUCUgGUgAUGGccAGGGCCa -3' miRNA: 3'- -GGAGGgaCCAGAgCGgUGUC--UCCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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