Results 101 - 116 of 116 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33622 | 3' | -60.1 | NC_007605.1 | + | 14475 | 0.77 | 0.247089 |
Target: 5'- cCCUCCCUcGUCUUGCCcuGCGcccGGGGCCa -3' miRNA: 3'- -GGAGGGAcCAGAGCGG--UGUc--UCCCGG- -5' |
|||||||
33622 | 3' | -60.1 | NC_007605.1 | + | 13388 | 0.67 | 0.706927 |
Target: 5'- gCCUCCCcaccgGGUCcaUCagGCCGgcCGGAGGGaCCc -3' miRNA: 3'- -GGAGGGa----CCAG--AG--CGGU--GUCUCCC-GG- -5' |
|||||||
33622 | 3' | -60.1 | NC_007605.1 | + | 13278 | 0.71 | 0.522922 |
Target: 5'- gCCUCCCcgGGUCcaccagGCCAgcCGGAGGGaCCc -3' miRNA: 3'- -GGAGGGa-CCAGag----CGGU--GUCUCCC-GG- -5' |
|||||||
33622 | 3' | -60.1 | NC_007605.1 | + | 13149 | 0.68 | 0.684764 |
Target: 5'- -gUCCCUcGUUUgGCacgcgggagaaucaCACGGAGGGCCu -3' miRNA: 3'- ggAGGGAcCAGAgCG--------------GUGUCUCCCGG- -5' |
|||||||
33622 | 3' | -60.1 | NC_007605.1 | + | 12986 | 0.72 | 0.441437 |
Target: 5'- gCCUCCCcgGGUCccagGCCAgcCGGAGGGaCCc -3' miRNA: 3'- -GGAGGGa-CCAGag--CGGU--GUCUCCC-GG- -5' |
|||||||
33622 | 3' | -60.1 | NC_007605.1 | + | 12118 | 0.66 | 0.763053 |
Target: 5'- uCCUCCCccGGUC---CC-CAGuAGGGCCg -3' miRNA: 3'- -GGAGGGa-CCAGagcGGuGUC-UCCCGG- -5' |
|||||||
33622 | 3' | -60.1 | NC_007605.1 | + | 11910 | 0.67 | 0.753918 |
Target: 5'- gCUCCC-GGg---GCCACGGAGcGGCUc -3' miRNA: 3'- gGAGGGaCCagagCGGUGUCUC-CCGG- -5' |
|||||||
33622 | 3' | -60.1 | NC_007605.1 | + | 11806 | 0.68 | 0.658484 |
Target: 5'- gCCUCUCUGcccuGUUugcccgggagcgUCGCCuggcccugguGCGGGGGGCCu -3' miRNA: 3'- -GGAGGGAC----CAG------------AGCGG----------UGUCUCCCGG- -5' |
|||||||
33622 | 3' | -60.1 | NC_007605.1 | + | 9965 | 0.66 | 0.789789 |
Target: 5'- gCCUggcaaCCUGGUCcuuaCGCCaaGCAGAGGcucaacaacGCCa -3' miRNA: 3'- -GGAg----GGACCAGa---GCGG--UGUCUCC---------CGG- -5' |
|||||||
33622 | 3' | -60.1 | NC_007605.1 | + | 8852 | 0.66 | 0.806976 |
Target: 5'- -gUCCCaUGuG-CUCGCUcuGC-GAGGGCCg -3' miRNA: 3'- ggAGGG-AC-CaGAGCGG--UGuCUCCCGG- -5' |
|||||||
33622 | 3' | -60.1 | NC_007605.1 | + | 4960 | 0.7 | 0.540894 |
Target: 5'- aCgUUCCUcgacaaguacgugGGUCUgGCCACGGAggaguucaugGGGCCa -3' miRNA: 3'- -GgAGGGA-------------CCAGAgCGGUGUCU----------CCCGG- -5' |
|||||||
33622 | 3' | -60.1 | NC_007605.1 | + | 3981 | 0.67 | 0.725954 |
Target: 5'- aUCUacaCCUGGUCcgCGCCggGCAGAcaacucGGCCg -3' miRNA: 3'- -GGAg--GGACCAGa-GCGG--UGUCUc-----CCGG- -5' |
|||||||
33622 | 3' | -60.1 | NC_007605.1 | + | 1659 | 0.7 | 0.560992 |
Target: 5'- gCCcCCCgggGGUCUUuCCugGG-GGGCCu -3' miRNA: 3'- -GGaGGGa--CCAGAGcGGugUCuCCCGG- -5' |
|||||||
33622 | 3' | -60.1 | NC_007605.1 | + | 720 | 0.69 | 0.599782 |
Target: 5'- uCgUCCuCUGGcUCUCuUCGcCAGGGGGCCu -3' miRNA: 3'- -GgAGG-GACC-AGAGcGGU-GUCUCCCGG- -5' |
|||||||
33622 | 3' | -60.1 | NC_007605.1 | + | 599 | 0.7 | 0.560992 |
Target: 5'- gCCcCCCgggGGUCUUuCCugGG-GGGCCu -3' miRNA: 3'- -GGaGGGa--CCAGAGcGGugUCuCCCGG- -5' |
|||||||
33622 | 3' | -60.1 | NC_007605.1 | + | 61 | 0.7 | 0.560992 |
Target: 5'- gCCcCCCgggGGUCUUuCCugGG-GGGCCu -3' miRNA: 3'- -GGaGGGa--CCAGAGcGGugUCuCCCGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home