Results 101 - 116 of 116 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33622 | 3' | -60.1 | NC_007605.1 | + | 78088 | 0.71 | 0.513555 |
Target: 5'- gCCaUCCUGGgauauuaUCcaGCUGCAGAGGGCCu -3' miRNA: 3'- -GGaGGGACCag-----AG--CGGUGUCUCCCGG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 61 | 0.7 | 0.560992 |
Target: 5'- gCCcCCCgggGGUCUUuCCugGG-GGGCCu -3' miRNA: 3'- -GGaGGGa--CCAGAGcGGugUCuCCCGG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 599 | 0.7 | 0.560992 |
Target: 5'- gCCcCCCgggGGUCUUuCCugGG-GGGCCu -3' miRNA: 3'- -GGaGGGa--CCAGAGcGGugUCuCCCGG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 1659 | 0.7 | 0.560992 |
Target: 5'- gCCcCCCgggGGUCUUuCCugGG-GGGCCu -3' miRNA: 3'- -GGaGGGa--CCAGAGcGGugUCuCCCGG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 59570 | 0.7 | 0.57935 |
Target: 5'- aCCUCCCUGGUgccugaagacccaCUC-CCuuGGAuguGGGCCc -3' miRNA: 3'- -GGAGGGACCA-------------GAGcGGugUCU---CCCGG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 105978 | 0.69 | 0.593932 |
Target: 5'- aUCUUCCUGGUgUgaaGuCCaaucagacuacugguGCAGAGGGCCg -3' miRNA: 3'- -GGAGGGACCAgAg--C-GG---------------UGUCUCCCGG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 17721 | 0.69 | 0.613462 |
Target: 5'- cCCUCCCcGGa--CGCCugGgcgccccucaaccccGAGGGCCa -3' miRNA: 3'- -GGAGGGaCCagaGCGGugU---------------CUCCCGG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 55479 | 0.69 | 0.615418 |
Target: 5'- cCCggCCCUGGUuuccuuuguguuccCUUGCUGCcugaugcuguuuaGGGGGGCCu -3' miRNA: 3'- -GGa-GGGACCA--------------GAGCGGUG-------------UCUCCCGG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 34537 | 0.69 | 0.618354 |
Target: 5'- gCUCCCgccucagggaucgUGGaCUCgGCCACAcagugggcuucGGGGGCCu -3' miRNA: 3'- gGAGGG-------------ACCaGAG-CGGUGU-----------CUCCCGG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 137781 | 0.69 | 0.619333 |
Target: 5'- cCCUgCCUG-UCUCuGCCcccCGGAGGGaCCg -3' miRNA: 3'- -GGAgGGACcAGAG-CGGu--GUCUCCC-GG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 140850 | 0.69 | 0.619333 |
Target: 5'- cCCUgCCUG-UCUCuGCCcccCGGAGGGaCCg -3' miRNA: 3'- -GGAgGGACcAGAG-CGGu--GUCUCCC-GG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 143919 | 0.69 | 0.619333 |
Target: 5'- cCCUgCCUG-UCUCuGCCcccCGGAGGGaCCg -3' miRNA: 3'- -GGAgGGACcAGAG-CGGu--GUCUCCC-GG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 146988 | 0.69 | 0.619333 |
Target: 5'- cCCUgCCUG-UCUCuGCCcccCGGAGGGaCCg -3' miRNA: 3'- -GGAgGGACcAGAG-CGGu--GUCUCCC-GG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 150057 | 0.69 | 0.619333 |
Target: 5'- cCCUgCCUG-UCUCuGCCcccCGGAGGGaCCg -3' miRNA: 3'- -GGAgGGACcAGAG-CGGu--GUCUCCC-GG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 153126 | 0.69 | 0.619333 |
Target: 5'- cCCUgCCUG-UCUCuGCCcccCGGAGGGaCCg -3' miRNA: 3'- -GGAgGGACcAGAG-CGGu--GUCUCCC-GG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 83259 | 0.75 | 0.289616 |
Target: 5'- -aUCCCUGGUauggaGCCugGGGGGGCg -3' miRNA: 3'- ggAGGGACCAgag--CGGugUCUCCCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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