Results 21 - 40 of 116 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33622 | 3' | -60.1 | NC_007605.1 | + | 34537 | 0.69 | 0.618354 |
Target: 5'- gCUCCCgccucagggaucgUGGaCUCgGCCACAcagugggcuucGGGGGCCu -3' miRNA: 3'- gGAGGG-------------ACCaGAG-CGGUGU-----------CUCCCGG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 61 | 0.7 | 0.560992 |
Target: 5'- gCCcCCCgggGGUCUUuCCugGG-GGGCCu -3' miRNA: 3'- -GGaGGGa--CCAGAGcGGugUCuCCCGG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 167402 | 0.66 | 0.806976 |
Target: 5'- cCCUCCCUGGaUCUUGCCAUcccc-GCa -3' miRNA: 3'- -GGAGGGACC-AGAGCGGUGucuccCGg -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 24166 | 0.66 | 0.763053 |
Target: 5'- cCCUCCUUaGGa--UGCCACAauaaAGGGCCa -3' miRNA: 3'- -GGAGGGA-CCagaGCGGUGUc---UCCCGG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 156195 | 0.69 | 0.619333 |
Target: 5'- cCCUgCCUG-UCUCuGCCcccCGGAGGGaCCg -3' miRNA: 3'- -GGAgGGACcAGAG-CGGu--GUCUCCC-GG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 78088 | 0.71 | 0.513555 |
Target: 5'- gCCaUCCUGGgauauuaUCcaGCUGCAGAGGGCCu -3' miRNA: 3'- -GGaGGGACCag-----AG--CGGUGUCUCCCGG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 17175 | 0.67 | 0.753918 |
Target: 5'- cCCaugCCCUcGGcCUCugaccgggacgGCUAcCAGGGGGCCa -3' miRNA: 3'- -GGa--GGGA-CCaGAG-----------CGGU-GUCUCCCGG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 83298 | 0.74 | 0.344999 |
Target: 5'- -aUCCCUGGUauggaGCCugGG-GGGCCg -3' miRNA: 3'- ggAGGGACCAgag--CGGugUCuCCCGG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 83259 | 0.75 | 0.289616 |
Target: 5'- -aUCCCUGGUauggaGCCugGGGGGGCg -3' miRNA: 3'- ggAGGGACCAgag--CGGugUCUCCCGg -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 159264 | 0.69 | 0.619333 |
Target: 5'- cCCUgCCUG-UCUCuGCCcccCGGAGGGaCCg -3' miRNA: 3'- -GGAgGGACcAGAG-CGGu--GUCUCCC-GG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 66289 | 0.66 | 0.806976 |
Target: 5'- gCC-CCCgUGGgaaCGCCugaugGCGGAGGGCa -3' miRNA: 3'- -GGaGGG-ACCagaGCGG-----UGUCUCCCGg -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 137781 | 0.69 | 0.619333 |
Target: 5'- cCCUgCCUG-UCUCuGCCcccCGGAGGGaCCg -3' miRNA: 3'- -GGAgGGACcAGAG-CGGu--GUCUCCC-GG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 45586 | 0.68 | 0.684764 |
Target: 5'- cCCUCCCUGGcuUCUgGaCCGCAGcGGagacagcuccugguGCCc -3' miRNA: 3'- -GGAGGGACC--AGAgC-GGUGUCuCC--------------CGG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 168910 | 0.66 | 0.780997 |
Target: 5'- gCCgCCCUGGUCUgaaagGCCuguugGCGccGGGCCg -3' miRNA: 3'- -GGaGGGACCAGAg----CGG-----UGUcuCCCGG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 67013 | 0.66 | 0.798452 |
Target: 5'- ---gCCUGG-CUUcagcgGCUGCGGAGGGCUg -3' miRNA: 3'- ggagGGACCaGAG-----CGGUGUCUCCCGG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 105978 | 0.69 | 0.593932 |
Target: 5'- aUCUUCCUGGUgUgaaGuCCaaucagacuacugguGCAGAGGGCCg -3' miRNA: 3'- -GGAGGGACCAgAg--C-GG---------------UGUCUCCCGG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 599 | 0.7 | 0.560992 |
Target: 5'- gCCcCCCgggGGUCUUuCCugGG-GGGCCu -3' miRNA: 3'- -GGaGGGa--CCAGAGcGGugUCuCCCGG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 28331 | 0.72 | 0.441437 |
Target: 5'- gCCUCCCcgGGUCccagGCCAgcCGGAGGGaCCc -3' miRNA: 3'- -GGAGGGa-CCAGag--CGGU--GUCUCCC-GG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 123576 | 0.7 | 0.571603 |
Target: 5'- gCCUCCUguguugcagggaguaGGUCUCGCgccugucuCGCGGggccGGGGCCg -3' miRNA: 3'- -GGAGGGa--------------CCAGAGCG--------GUGUC----UCCCGG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 4960 | 0.7 | 0.540894 |
Target: 5'- aCgUUCCUcgacaaguacgugGGUCUgGCCACGGAggaguucaugGGGCCa -3' miRNA: 3'- -GgAGGGA-------------CCAGAgCGGUGUCU----------CCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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