miRNA display CGI


Results 41 - 60 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33622 3' -60.1 NC_007605.1 + 18256 0.66 0.763053
Target:  5'- uCCUCCCccGGUC---CC-CAGuAGGGCCg -3'
miRNA:   3'- -GGAGGGa-CCAGagcGGuGUC-UCCCGG- -5'
33622 3' -60.1 NC_007605.1 + 68939 0.67 0.716474
Target:  5'- uCCUCUggacgCUGGUaccCGCCAagcacgcgguGAGGGCCg -3'
miRNA:   3'- -GGAGG-----GACCAga-GCGGUgu--------CUCCCGG- -5'
33622 3' -60.1 NC_007605.1 + 15187 0.66 0.763053
Target:  5'- uCCUCCCccGGUC---CC-CAGuAGGGCCg -3'
miRNA:   3'- -GGAGGGa-CCAGagcGGuGUC-UCCCGG- -5'
33622 3' -60.1 NC_007605.1 + 12118 0.66 0.763053
Target:  5'- uCCUCCCccGGUC---CC-CAGuAGGGCCg -3'
miRNA:   3'- -GGAGGGa-CCAGagcGGuGUC-UCCCGG- -5'
33622 3' -60.1 NC_007605.1 + 75160 0.67 0.744684
Target:  5'- gCCUCCCgUGGUgCggcaGCCGgAGcacucuGGGCCc -3'
miRNA:   3'- -GGAGGG-ACCA-Gag--CGGUgUCu-----CCCGG- -5'
33622 3' -60.1 NC_007605.1 + 165786 0.67 0.716474
Target:  5'- uCCgCCCaGGUCUUGCCAauuGGGGUg -3'
miRNA:   3'- -GGaGGGaCCAGAGCGGUgucUCCCGg -5'
33622 3' -60.1 NC_007605.1 + 54509 0.67 0.73536
Target:  5'- uCCUCCUucuuUGG-CgguaGCCGCGGGgguggcGGGCCa -3'
miRNA:   3'- -GGAGGG----ACCaGag--CGGUGUCU------CCCGG- -5'
33622 3' -60.1 NC_007605.1 + 87749 0.67 0.725954
Target:  5'- gCCUCCUgccguggGGcCUCcuGCCGC--GGGGCCu -3'
miRNA:   3'- -GGAGGGa------CCaGAG--CGGUGucUCCCGG- -5'
33622 3' -60.1 NC_007605.1 + 50598 0.67 0.715522
Target:  5'- uUCUCCCgGGUCgaaCGCUggaguaGCGGAGGcugcugcGCCg -3'
miRNA:   3'- -GGAGGGaCCAGa--GCGG------UGUCUCC-------CGG- -5'
33622 3' -60.1 NC_007605.1 + 26751 0.77 0.247089
Target:  5'- cCCUCCCUcGUCUUGCCcuGCGcccGGGGCCa -3'
miRNA:   3'- -GGAGGGAcCAGAGCGG--UGUc--UCCCGG- -5'
33622 3' -60.1 NC_007605.1 + 25554 0.71 0.522922
Target:  5'- gCCUCCCcgGGUCcaccagGCCAgcCGGAGGGaCCc -3'
miRNA:   3'- -GGAGGGa-CCAGag----CGGU--GUCUCCC-GG- -5'
33622 3' -60.1 NC_007605.1 + 28623 0.71 0.522922
Target:  5'- gCCUCCCcgGGUCcaccagGCCAgcCGGAGGGaCCc -3'
miRNA:   3'- -GGAGGGa-CCAGag----CGGU--GUCUCCC-GG- -5'
33622 3' -60.1 NC_007605.1 + 31692 0.71 0.522922
Target:  5'- gCCUCCCcgGGUCcaccagGCCAgcCGGAGGGaCCc -3'
miRNA:   3'- -GGAGGGa-CCAGag----CGGU--GUCUCCC-GG- -5'
33622 3' -60.1 NC_007605.1 + 34761 0.71 0.522922
Target:  5'- gCCUCCCcgGGUCcaccagGCCAgcCGGAGGGaCCc -3'
miRNA:   3'- -GGAGGGa-CCAGag----CGGU--GUCUCCC-GG- -5'
33622 3' -60.1 NC_007605.1 + 4960 0.7 0.540894
Target:  5'- aCgUUCCUcgacaaguacgugGGUCUgGCCACGGAggaguucaugGGGCCa -3'
miRNA:   3'- -GgAGGGA-------------CCAGAgCGGUGUCU----------CCCGG- -5'
33622 3' -60.1 NC_007605.1 + 123576 0.7 0.571603
Target:  5'- gCCUCCUguguugcagggaguaGGUCUCGCgccugucuCGCGGggccGGGGCCg -3'
miRNA:   3'- -GGAGGGa--------------CCAGAGCG--------GUGUC----UCCCGG- -5'
33622 3' -60.1 NC_007605.1 + 28331 0.72 0.441437
Target:  5'- gCCUCCCcgGGUCccagGCCAgcCGGAGGGaCCc -3'
miRNA:   3'- -GGAGGGa-CCAGag--CGGU--GUCUCCC-GG- -5'
33622 3' -60.1 NC_007605.1 + 25262 0.72 0.441437
Target:  5'- gCCUCCCcgGGUCccagGCCAgcCGGAGGGaCCc -3'
miRNA:   3'- -GGAGGGa-CCAGag--CGGU--GUCUCCC-GG- -5'
33622 3' -60.1 NC_007605.1 + 22193 0.72 0.441437
Target:  5'- gCCUCCCcgGGUCccagGCCAgcCGGAGGGaCCc -3'
miRNA:   3'- -GGAGGGa-CCAGag--CGGU--GUCUCCC-GG- -5'
33622 3' -60.1 NC_007605.1 + 104743 0.7 0.57935
Target:  5'- gUCUgCCUcgGGUCUCGCCGCuAGuugguccAGGGUCc -3'
miRNA:   3'- -GGAgGGA--CCAGAGCGGUG-UC-------UCCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.