Results 61 - 80 of 116 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33622 | 3' | -60.1 | NC_007605.1 | + | 25262 | 0.72 | 0.441437 |
Target: 5'- gCCUCCCcgGGUCccagGCCAgcCGGAGGGaCCc -3' miRNA: 3'- -GGAGGGa-CCAGag--CGGU--GUCUCCC-GG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 22193 | 0.72 | 0.441437 |
Target: 5'- gCCUCCCcgGGUCccagGCCAgcCGGAGGGaCCc -3' miRNA: 3'- -GGAGGGa-CCAGag--CGGU--GUCUCCC-GG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 19124 | 0.72 | 0.441437 |
Target: 5'- gCCUCCCcgGGUCccagGCCAgcCGGAGGGaCCc -3' miRNA: 3'- -GGAGGGa-CCAGag--CGGU--GUCUCCC-GG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 26751 | 0.77 | 0.247089 |
Target: 5'- cCCUCCCUcGUCUUGCCcuGCGcccGGGGCCa -3' miRNA: 3'- -GGAGGGAcCAGAGCGG--UGUc--UCCCGG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 23682 | 0.77 | 0.247089 |
Target: 5'- cCCUCCCUcGUCUUGCCcuGCGcccGGGGCCa -3' miRNA: 3'- -GGAGGGAcCAGAGCGG--UGUc--UCCCGG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 31692 | 0.71 | 0.522922 |
Target: 5'- gCCUCCCcgGGUCcaccagGCCAgcCGGAGGGaCCc -3' miRNA: 3'- -GGAGGGa-CCAGag----CGGU--GUCUCCC-GG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 34761 | 0.71 | 0.522922 |
Target: 5'- gCCUCCCcgGGUCcaccagGCCAgcCGGAGGGaCCc -3' miRNA: 3'- -GGAGGGa-CCAGag----CGGU--GUCUCCC-GG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 50598 | 0.67 | 0.715522 |
Target: 5'- uUCUCCCgGGUCgaaCGCUggaguaGCGGAGGcugcugcGCCg -3' miRNA: 3'- -GGAGGGaCCAGa--GCGG------UGUCUCC-------CGG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 34871 | 0.67 | 0.706927 |
Target: 5'- gCCUCCCcaccgGGUCcaUCagGCCGgcCGGAGGGaCCc -3' miRNA: 3'- -GGAGGGa----CCAG--AG--CGGU--GUCUCCC-GG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 31802 | 0.67 | 0.706927 |
Target: 5'- gCCUCCCcaccgGGUCcaUCagGCCGgcCGGAGGGaCCc -3' miRNA: 3'- -GGAGGGa----CCAG--AG--CGGU--GUCUCCC-GG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 28733 | 0.67 | 0.706927 |
Target: 5'- gCCUCCCcaccgGGUCcaUCagGCCGgcCGGAGGGaCCc -3' miRNA: 3'- -GGAGGGa----CCAG--AG--CGGU--GUCUCCC-GG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 25664 | 0.67 | 0.706927 |
Target: 5'- gCCUCCCcaccgGGUCcaUCagGCCGgcCGGAGGGaCCc -3' miRNA: 3'- -GGAGGGa----CCAG--AG--CGGU--GUCUCCC-GG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 22595 | 0.67 | 0.706927 |
Target: 5'- gCCUCCCcaccgGGUCcaUCagGCCGgcCGGAGGGaCCc -3' miRNA: 3'- -GGAGGGa----CCAG--AG--CGGU--GUCUCCC-GG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 19526 | 0.67 | 0.706927 |
Target: 5'- gCCUCCCcaccgGGUCcaUCagGCCGgcCGGAGGGaCCc -3' miRNA: 3'- -GGAGGGa----CCAG--AG--CGGU--GUCUCCC-GG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 16457 | 0.67 | 0.706927 |
Target: 5'- gCCUCCCcaccgGGUCcaUCagGCCGgcCGGAGGGaCCc -3' miRNA: 3'- -GGAGGGa----CCAG--AG--CGGU--GUCUCCC-GG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 13388 | 0.67 | 0.706927 |
Target: 5'- gCCUCCCcaccgGGUCcaUCagGCCGgcCGGAGGGaCCc -3' miRNA: 3'- -GGAGGGa----CCAG--AG--CGGU--GUCUCCC-GG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 61214 | 0.68 | 0.683795 |
Target: 5'- uCUUCCCUG--CUCGCCggggaguaggggggGCuuacaggGGAGGGCCg -3' miRNA: 3'- -GGAGGGACcaGAGCGG--------------UG-------UCUCCCGG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 104743 | 0.7 | 0.57935 |
Target: 5'- gUCUgCCUcgGGUCUCGCCGCuAGuugguccAGGGUCc -3' miRNA: 3'- -GGAgGGA--CCAGAGCGGUG-UC-------UCCCGG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 123576 | 0.7 | 0.571603 |
Target: 5'- gCCUCCUguguugcagggaguaGGUCUCGCgccugucuCGCGGggccGGGGCCg -3' miRNA: 3'- -GGAGGGa--------------CCAGAGCG--------GUGUC----UCCCGG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 4960 | 0.7 | 0.540894 |
Target: 5'- aCgUUCCUcgacaaguacgugGGUCUgGCCACGGAggaguucaugGGGCCa -3' miRNA: 3'- -GgAGGGA-------------CCAGAgCGGUGUCU----------CCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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