Results 101 - 116 of 116 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33622 | 3' | -60.1 | NC_007605.1 | + | 15187 | 0.66 | 0.763053 |
Target: 5'- uCCUCCCccGGUC---CC-CAGuAGGGCCg -3' miRNA: 3'- -GGAGGGa-CCAGagcGGuGUC-UCCCGG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 25664 | 0.67 | 0.706927 |
Target: 5'- gCCUCCCcaccgGGUCcaUCagGCCGgcCGGAGGGaCCc -3' miRNA: 3'- -GGAGGGa----CCAG--AG--CGGU--GUCUCCC-GG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 22595 | 0.67 | 0.706927 |
Target: 5'- gCCUCCCcaccgGGUCcaUCagGCCGgcCGGAGGGaCCc -3' miRNA: 3'- -GGAGGGa----CCAG--AG--CGGU--GUCUCCC-GG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 107082 | 0.69 | 0.590037 |
Target: 5'- aCCUCUCggccugGGUCUCG--GCAGuGGGCUc -3' miRNA: 3'- -GGAGGGa-----CCAGAGCggUGUCuCCCGG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 720 | 0.69 | 0.599782 |
Target: 5'- uCgUCCuCUGGcUCUCuUCGcCAGGGGGCCu -3' miRNA: 3'- -GgAGG-GACC-AGAGcGGU-GUCUCCCGG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 87794 | 0.69 | 0.60955 |
Target: 5'- gCCUCCUgccgcggGGcCUCcuGCCGCGGggcuccugccgcGGGGCCu -3' miRNA: 3'- -GGAGGGa------CCaGAG--CGGUGUC------------UCCCGG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 64449 | 0.69 | 0.619333 |
Target: 5'- gCCUCUacgcgGGUCUCagggcaGCCcuGCAGcGGGCCa -3' miRNA: 3'- -GGAGGga---CCAGAG------CGG--UGUCuCCCGG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 126037 | 0.69 | 0.619333 |
Target: 5'- gUCUCCgCUgcGGUCcagaaGCCAgGGAGGGCa -3' miRNA: 3'- -GGAGG-GA--CCAGag---CGGUgUCUCCCGg -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 129105 | 0.69 | 0.629124 |
Target: 5'- gCCg-CCUGGUCcagcgUUGCCuccUGGGGGGCCa -3' miRNA: 3'- -GGagGGACCAG-----AGCGGu--GUCUCCCGG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 60464 | 0.69 | 0.638918 |
Target: 5'- cCCUCCC-GGUCUCuGCgucgUACAGGagcGGGCg -3' miRNA: 3'- -GGAGGGaCCAGAG-CG----GUGUCU---CCCGg -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 156219 | 0.68 | 0.681856 |
Target: 5'- -gUCCCUGGcugccugcaaugcucUgCUgGCCACuGAGGGUCc -3' miRNA: 3'- ggAGGGACC---------------A-GAgCGGUGuCUCCCGG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 61214 | 0.68 | 0.683795 |
Target: 5'- uCUUCCCUG--CUCGCCggggaguaggggggGCuuacaggGGAGGGCCg -3' miRNA: 3'- -GGAGGGACcaGAGCGG--------------UG-------UCUCCCGG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 13388 | 0.67 | 0.706927 |
Target: 5'- gCCUCCCcaccgGGUCcaUCagGCCGgcCGGAGGGaCCc -3' miRNA: 3'- -GGAGGGa----CCAG--AG--CGGU--GUCUCCC-GG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 16457 | 0.67 | 0.706927 |
Target: 5'- gCCUCCCcaccgGGUCcaUCagGCCGgcCGGAGGGaCCc -3' miRNA: 3'- -GGAGGGa----CCAG--AG--CGGU--GUCUCCC-GG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 19526 | 0.67 | 0.706927 |
Target: 5'- gCCUCCCcaccgGGUCcaUCagGCCGgcCGGAGGGaCCc -3' miRNA: 3'- -GGAGGGa----CCAG--AG--CGGU--GUCUCCC-GG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 18256 | 0.66 | 0.763053 |
Target: 5'- uCCUCCCccGGUC---CC-CAGuAGGGCCg -3' miRNA: 3'- -GGAGGGa-CCAGagcGGuGUC-UCCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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