miRNA display CGI


Results 21 - 40 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33622 3' -60.1 NC_007605.1 + 59035 0.66 0.772082
Target:  5'- ---gCCUGGUUgcacgaggccgUGCCuaggauGCGGAGGGCCg -3'
miRNA:   3'- ggagGGACCAGa----------GCGG------UGUCUCCCGG- -5'
33622 3' -60.1 NC_007605.1 + 51251 0.66 0.772082
Target:  5'- -gUCCCUGGgCcUGCCA---GGGGCCa -3'
miRNA:   3'- ggAGGGACCaGaGCGGUgucUCCCGG- -5'
33622 3' -60.1 NC_007605.1 + 55912 0.66 0.772082
Target:  5'- uCCUCCUcaa-CUCGCUcCAG-GGGCCa -3'
miRNA:   3'- -GGAGGGaccaGAGCGGuGUCuCCCGG- -5'
33622 3' -60.1 NC_007605.1 + 104685 0.66 0.763053
Target:  5'- gUCUCCg-GGUCagGUCGCGGAccaGGGUCa -3'
miRNA:   3'- -GGAGGgaCCAGagCGGUGUCU---CCCGG- -5'
33622 3' -60.1 NC_007605.1 + 12118 0.66 0.763053
Target:  5'- uCCUCCCccGGUC---CC-CAGuAGGGCCg -3'
miRNA:   3'- -GGAGGGa-CCAGagcGGuGUC-UCCCGG- -5'
33622 3' -60.1 NC_007605.1 + 15187 0.66 0.763053
Target:  5'- uCCUCCCccGGUC---CC-CAGuAGGGCCg -3'
miRNA:   3'- -GGAGGGa-CCAGagcGGuGUC-UCCCGG- -5'
33622 3' -60.1 NC_007605.1 + 18256 0.66 0.763053
Target:  5'- uCCUCCCccGGUC---CC-CAGuAGGGCCg -3'
miRNA:   3'- -GGAGGGa-CCAGagcGGuGUC-UCCCGG- -5'
33622 3' -60.1 NC_007605.1 + 21325 0.66 0.763053
Target:  5'- uCCUCCCccGGUC---CC-CAGuAGGGCCg -3'
miRNA:   3'- -GGAGGGa-CCAGagcGGuGUC-UCCCGG- -5'
33622 3' -60.1 NC_007605.1 + 24394 0.66 0.763053
Target:  5'- uCCUCCCccGGUC---CC-CAGuAGGGCCg -3'
miRNA:   3'- -GGAGGGa-CCAGagcGGuGUC-UCCCGG- -5'
33622 3' -60.1 NC_007605.1 + 27463 0.66 0.763053
Target:  5'- uCCUCCCccGGUC---CC-CAGuAGGGCCg -3'
miRNA:   3'- -GGAGGGa-CCAGagcGGuGUC-UCCCGG- -5'
33622 3' -60.1 NC_007605.1 + 24166 0.66 0.763053
Target:  5'- cCCUCCUUaGGa--UGCCACAauaaAGGGCCa -3'
miRNA:   3'- -GGAGGGA-CCagaGCGGUGUc---UCCCGG- -5'
33622 3' -60.1 NC_007605.1 + 102653 0.66 0.763053
Target:  5'- cCCUCUCaaGGccaUCguggGCCACGGGGGGCg -3'
miRNA:   3'- -GGAGGGa-CC---AGag--CGGUGUCUCCCGg -5'
33622 3' -60.1 NC_007605.1 + 33601 0.66 0.763053
Target:  5'- uCCUCCCccGGUC---CC-CAGuAGGGCCg -3'
miRNA:   3'- -GGAGGGa-CCAGagcGGuGUC-UCCCGG- -5'
33622 3' -60.1 NC_007605.1 + 30532 0.66 0.763053
Target:  5'- uCCUCCCccGGUC---CC-CAGuAGGGCCg -3'
miRNA:   3'- -GGAGGGa-CCAGagcGGuGUC-UCCCGG- -5'
33622 3' -60.1 NC_007605.1 + 11910 0.67 0.753918
Target:  5'- gCUCCC-GGg---GCCACGGAGcGGCUc -3'
miRNA:   3'- gGAGGGaCCagagCGGUGUCUC-CCGG- -5'
33622 3' -60.1 NC_007605.1 + 17175 0.67 0.753918
Target:  5'- cCCaugCCCUcGGcCUCugaccgggacgGCUAcCAGGGGGCCa -3'
miRNA:   3'- -GGa--GGGA-CCaGAG-----------CGGU-GUCUCCCGG- -5'
33622 3' -60.1 NC_007605.1 + 75160 0.67 0.744684
Target:  5'- gCCUCCCgUGGUgCggcaGCCGgAGcacucuGGGCCc -3'
miRNA:   3'- -GGAGGG-ACCA-Gag--CGGUgUCu-----CCCGG- -5'
33622 3' -60.1 NC_007605.1 + 54509 0.67 0.73536
Target:  5'- uCCUCCUucuuUGG-CgguaGCCGCGGGgguggcGGGCCa -3'
miRNA:   3'- -GGAGGG----ACCaGag--CGGUGUCU------CCCGG- -5'
33622 3' -60.1 NC_007605.1 + 66050 0.67 0.73536
Target:  5'- cCCUCCUgGGcCUCGaCgCGCGGucAGGGCa -3'
miRNA:   3'- -GGAGGGaCCaGAGC-G-GUGUC--UCCCGg -5'
33622 3' -60.1 NC_007605.1 + 87749 0.67 0.725954
Target:  5'- gCCUCCUgccguggGGcCUCcuGCCGC--GGGGCCu -3'
miRNA:   3'- -GGAGGGa------CCaGAG--CGGUGucUCCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.