miRNA display CGI


Results 21 - 40 of 117 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33622 5' -58.3 NC_007605.1 + 156440 0.66 0.826837
Target:  5'- gCGGCCCUacUggGGAccGGGGGaGGAUCAg -3'
miRNA:   3'- -GCCGGGGa-GuuUCUa-CCCCC-CUUGGU- -5'
33622 5' -58.3 NC_007605.1 + 153371 0.66 0.826837
Target:  5'- gCGGCCCUacUggGGAccGGGGGaGGAUCAg -3'
miRNA:   3'- -GCCGGGGa-GuuUCUa-CCCCC-CUUGGU- -5'
33622 5' -58.3 NC_007605.1 + 143150 0.66 0.826837
Target:  5'- aGGCCCCUCuccgcgagGGAGAggcucgggccUGGaGGGGAggagaggggacGCCu -3'
miRNA:   3'- gCCGGGGAG--------UUUCU----------ACC-CCCCU-----------UGGu -5'
33622 5' -58.3 NC_007605.1 + 144164 0.66 0.826837
Target:  5'- gCGGCCCUacUggGGAccGGGGGaGGAUCAg -3'
miRNA:   3'- -GCCGGGGa-GuuUCUa-CCCCC-CUUGGU- -5'
33622 5' -58.3 NC_007605.1 + 158495 0.66 0.826837
Target:  5'- aGGCCCCUCuccgcgagGGAGAggcucgggccUGGaGGGGAggagaggggacGCCu -3'
miRNA:   3'- gCCGGGGAG--------UUUCU----------ACC-CCCCU-----------UGGu -5'
33622 5' -58.3 NC_007605.1 + 152357 0.66 0.826837
Target:  5'- aGGCCCCUCuccgcgagGGAGAggcucgggccUGGaGGGGAggagaggggacGCCu -3'
miRNA:   3'- gCCGGGGAG--------UUUCU----------ACC-CCCCU-----------UGGu -5'
33622 5' -58.3 NC_007605.1 + 141095 0.66 0.826837
Target:  5'- gCGGCCCUacUggGGAccGGGGGaGGAUCAg -3'
miRNA:   3'- -GCCGGGGa-GuuUCUa-CCCCC-CUUGGU- -5'
33622 5' -58.3 NC_007605.1 + 150302 0.66 0.826837
Target:  5'- gCGGCCCUacUggGGAccGGGGGaGGAUCAg -3'
miRNA:   3'- -GCCGGGGa-GuuUCUa-CCCCC-CUUGGU- -5'
33622 5' -58.3 NC_007605.1 + 155426 0.66 0.826837
Target:  5'- aGGCCCCUCuccgcgagGGAGAggcucgggccUGGaGGGGAggagaggggacGCCu -3'
miRNA:   3'- gCCGGGGAG--------UUUCU----------ACC-CCCCU-----------UGGu -5'
33622 5' -58.3 NC_007605.1 + 149288 0.66 0.826837
Target:  5'- aGGCCCCUCuccgcgagGGAGAggcucgggccUGGaGGGGAggagaggggacGCCu -3'
miRNA:   3'- gCCGGGGAG--------UUUCU----------ACC-CCCCU-----------UGGu -5'
33622 5' -58.3 NC_007605.1 + 138026 0.66 0.826837
Target:  5'- gCGGCCCUacUggGGAccGGGGGaGGAUCAg -3'
miRNA:   3'- -GCCGGGGa-GuuUCUa-CCCCC-CUUGGU- -5'
33622 5' -58.3 NC_007605.1 + 147233 0.66 0.826837
Target:  5'- gCGGCCCUacUggGGAccGGGGGaGGAUCAg -3'
miRNA:   3'- -GCCGGGGa-GuuUCUa-CCCCC-CUUGGU- -5'
33622 5' -58.3 NC_007605.1 + 63074 0.66 0.826837
Target:  5'- uGGCCCCgggGGAGGUGGcGGucGCCGg -3'
miRNA:   3'- gCCGGGGag-UUUCUACCcCCcuUGGU- -5'
33622 5' -58.3 NC_007605.1 + 146219 0.66 0.826837
Target:  5'- aGGCCCCUCuccgcgagGGAGAggcucgggccUGGaGGGGAggagaggggacGCCu -3'
miRNA:   3'- gCCGGGGAG--------UUUCU----------ACC-CCCCU-----------UGGu -5'
33622 5' -58.3 NC_007605.1 + 157351 0.66 0.82435
Target:  5'- gGGUgCC-CAGGGAcuucccgggggccgUGGGGGGcACCGg -3'
miRNA:   3'- gCCGgGGaGUUUCU--------------ACCCCCCuUGGU- -5'
33622 5' -58.3 NC_007605.1 + 9513 0.66 0.82435
Target:  5'- gGGgUCCUCAcggccaaggaggccAAGGUGGugcauGGGGAGCCc -3'
miRNA:   3'- gCCgGGGAGU--------------UUCUACC-----CCCCUUGGu -5'
33622 5' -58.3 NC_007605.1 + 169966 0.66 0.818489
Target:  5'- aGGCCCCcCAggaAAGAcccccGGGGGGcAUCGg -3'
miRNA:   3'- gCCGGGGaGU---UUCUa----CCCCCCuUGGU- -5'
33622 5' -58.3 NC_007605.1 + 170504 0.66 0.818489
Target:  5'- aGGCCCCcCAggaAAGAcccccgUGGggcauGGGGGGCCGc -3'
miRNA:   3'- gCCGGGGaGU---UUCU------ACC-----CCCCUUGGU- -5'
33622 5' -58.3 NC_007605.1 + 171564 0.66 0.818489
Target:  5'- aGGCCCCcCAggaAAGAcccccGGGGGGcAUCGg -3'
miRNA:   3'- gCCGGGGaGU---UUCUa----CCCCCCuUGGU- -5'
33622 5' -58.3 NC_007605.1 + 171026 0.66 0.818489
Target:  5'- aGGCCCCcCAggaAAGAcccccGGGGGGcAUCGg -3'
miRNA:   3'- gCCGGGGaGU---UUCUa----CCCCCCuUGGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.