Results 21 - 31 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33623 | 3' | -58 | NC_007605.1 | + | 105024 | 0.68 | 0.686345 |
Target: 5'- -aGCCGCGAAccAGCGGUugcgguggguuucgACCGUUAGg -3' miRNA: 3'- uaCGGCGUUUccUCGCCG--------------UGGCAGUC- -5' |
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33623 | 3' | -58 | NC_007605.1 | + | 109495 | 0.66 | 0.821141 |
Target: 5'- gGUGgaGCAcaguGGGGGCGGgGCCGgCGGg -3' miRNA: 3'- -UACggCGUu---UCCUCGCCgUGGCaGUC- -5' |
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33623 | 3' | -58 | NC_007605.1 | + | 110205 | 0.69 | 0.678294 |
Target: 5'- -cGCCGCGAcggcuguggguguGGGGGCGGCGgCGg--- -3' miRNA: 3'- uaCGGCGUU-------------UCCUCGCCGUgGCaguc -5' |
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33623 | 3' | -58 | NC_007605.1 | + | 122628 | 0.66 | 0.845857 |
Target: 5'- cUGuCCGCAAaguuaaauacAGGAGCuGCcugACCGUCAc -3' miRNA: 3'- uAC-GGCGUU----------UCCUCGcCG---UGGCAGUc -5' |
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33623 | 3' | -58 | NC_007605.1 | + | 124973 | 0.69 | 0.669209 |
Target: 5'- cUGCCGCAGGuucGaGAGCaGGUcggcauccACCGUCAGa -3' miRNA: 3'- uACGGCGUUU---C-CUCG-CCG--------UGGCAGUC- -5' |
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33623 | 3' | -58 | NC_007605.1 | + | 136314 | 0.66 | 0.8378 |
Target: 5'- -aGCCuGCGGAGGuuCGGCcGCCG-CGGg -3' miRNA: 3'- uaCGG-CGUUUCCucGCCG-UGGCaGUC- -5' |
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33623 | 3' | -58 | NC_007605.1 | + | 136714 | 0.67 | 0.748391 |
Target: 5'- -gGCUGCAGGGGGGCuGaCACCGggccgcCGGg -3' miRNA: 3'- uaCGGCGUUUCCUCGcC-GUGGCa-----GUC- -5' |
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33623 | 3' | -58 | NC_007605.1 | + | 152373 | 0.67 | 0.748391 |
Target: 5'- cAUGCCGCuGAGGAa-GGCGCUGUaGGa -3' miRNA: 3'- -UACGGCGuUUCCUcgCCGUGGCAgUC- -5' |
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33623 | 3' | -58 | NC_007605.1 | + | 159643 | 0.72 | 0.480298 |
Target: 5'- -cGCCGUGAAGGcGGCGGCGCaGUCc- -3' miRNA: 3'- uaCGGCGUUUCC-UCGCCGUGgCAGuc -5' |
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33623 | 3' | -58 | NC_007605.1 | + | 163978 | 1.07 | 0.002333 |
Target: 5'- gAUGCCGCAAAGGAGCGGCACCGUCAGg -3' miRNA: 3'- -UACGGCGUUUCCUCGCCGUGGCAGUC- -5' |
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33623 | 3' | -58 | NC_007605.1 | + | 165574 | 0.68 | 0.738751 |
Target: 5'- aGUGUgGCAuugGGGGGGUGGCAUUG-CGGg -3' miRNA: 3'- -UACGgCGU---UUCCUCGCCGUGGCaGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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