miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33623 3' -58 NC_007605.1 + 163978 1.07 0.002333
Target:  5'- gAUGCCGCAAAGGAGCGGCACCGUCAGg -3'
miRNA:   3'- -UACGGCGUUUCCUCGCCGUGGCAGUC- -5'
33623 3' -58 NC_007605.1 + 60861 0.66 0.841045
Target:  5'- -cGCCuggggggacuccccgGCAucGGAGgGGCcCCGUCAu -3'
miRNA:   3'- uaCGG---------------CGUuuCCUCgCCGuGGCAGUc -5'
33623 3' -58 NC_007605.1 + 136314 0.66 0.8378
Target:  5'- -aGCCuGCGGAGGuuCGGCcGCCG-CGGg -3'
miRNA:   3'- uaCGG-CGUUUCCucGCCG-UGGCaGUC- -5'
33623 3' -58 NC_007605.1 + 152373 0.67 0.748391
Target:  5'- cAUGCCGCuGAGGAa-GGCGCUGUaGGa -3'
miRNA:   3'- -UACGGCGuUUCCUcgCCGUGGCAgUC- -5'
33623 3' -58 NC_007605.1 + 165574 0.68 0.738751
Target:  5'- aGUGUgGCAuugGGGGGGUGGCAUUG-CGGg -3'
miRNA:   3'- -UACGgCGU---UUCCUCGCCGUGGCaGUC- -5'
33623 3' -58 NC_007605.1 + 99930 0.68 0.729019
Target:  5'- -gGCCGUGAAGGAGaGGC-UCGUCuGa -3'
miRNA:   3'- uaCGGCGUUUCCUCgCCGuGGCAGuC- -5'
33623 3' -58 NC_007605.1 + 61439 0.68 0.719205
Target:  5'- -cGUCGCGGcGGGGGCGGCGgCGggcgUAGa -3'
miRNA:   3'- uaCGGCGUU-UCCUCGCCGUgGCa---GUC- -5'
33623 3' -58 NC_007605.1 + 85700 0.68 0.699365
Target:  5'- gAUGCCGCAcgGGGGGGCcucGCAcucucCCGUCGu -3'
miRNA:   3'- -UACGGCGU--UUCCUCGc--CGU-----GGCAGUc -5'
33623 3' -58 NC_007605.1 + 58090 0.68 0.689357
Target:  5'- -gGCCGCGGAGGc-CGGgGCCG-CGGa -3'
miRNA:   3'- uaCGGCGUUUCCucGCCgUGGCaGUC- -5'
33623 3' -58 NC_007605.1 + 58060 0.68 0.689357
Target:  5'- -gGCCGCGGAGGc-CGGgGCCG-CGGa -3'
miRNA:   3'- uaCGGCGUUUCCucGCCgUGGCaGUC- -5'
33623 3' -58 NC_007605.1 + 124973 0.69 0.669209
Target:  5'- cUGCCGCAGGuucGaGAGCaGGUcggcauccACCGUCAGa -3'
miRNA:   3'- uACGGCGUUU---C-CUCG-CCG--------UGGCAGUC- -5'
33623 3' -58 NC_007605.1 + 58135 0.71 0.538139
Target:  5'- -gGCCGCAGAGGc-CGGgGCCG-CAGa -3'
miRNA:   3'- uaCGGCGUUUCCucGCCgUGGCaGUC- -5'
33623 3' -58 NC_007605.1 + 159643 0.72 0.480298
Target:  5'- -cGCCGUGAAGGcGGCGGCGCaGUCc- -3'
miRNA:   3'- uaCGGCGUUUCC-UCGCCGUGgCAGuc -5'
33623 3' -58 NC_007605.1 + 21412 0.68 0.719205
Target:  5'- -aGuuGUAuuGGGGCcGCACCGUCGc -3'
miRNA:   3'- uaCggCGUuuCCUCGcCGUGGCAGUc -5'
33623 3' -58 NC_007605.1 + 105024 0.68 0.686345
Target:  5'- -aGCCGCGAAccAGCGGUugcgguggguuucgACCGUUAGg -3'
miRNA:   3'- uaCGGCGUUUccUCGCCG--------------UGGCAGUC- -5'
33623 3' -58 NC_007605.1 + 110205 0.69 0.678294
Target:  5'- -cGCCGCGAcggcuguggguguGGGGGCGGCGgCGg--- -3'
miRNA:   3'- uaCGGCGUU-------------UCCUCGCCGUgGCaguc -5'
33623 3' -58 NC_007605.1 + 103340 0.69 0.669209
Target:  5'- aAUGCgGCAGAGGcuaAGCGcCGCCGcCAGc -3'
miRNA:   3'- -UACGgCGUUUCC---UCGCcGUGGCaGUC- -5'
33623 3' -58 NC_007605.1 + 51686 0.7 0.628623
Target:  5'- -aGUgGCGGuGGAacaCGGCACCGUCAGc -3'
miRNA:   3'- uaCGgCGUUuCCUc--GCCGUGGCAGUC- -5'
33623 3' -58 NC_007605.1 + 20520 0.71 0.528315
Target:  5'- -gGCCGCcGAGGGGCaGGCugCGgccgccCAGg -3'
miRNA:   3'- uaCGGCGuUUCCUCG-CCGugGCa-----GUC- -5'
33623 3' -58 NC_007605.1 + 122628 0.66 0.845857
Target:  5'- cUGuCCGCAAaguuaaauacAGGAGCuGCcugACCGUCAc -3'
miRNA:   3'- uAC-GGCGUU----------UCCUCGcCG---UGGCAGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.