Results 21 - 31 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33623 | 3' | -58 | NC_007605.1 | + | 58090 | 0.68 | 0.689357 |
Target: 5'- -gGCCGCGGAGGc-CGGgGCCG-CGGa -3' miRNA: 3'- uaCGGCGUUUCCucGCCgUGGCaGUC- -5' |
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33623 | 3' | -58 | NC_007605.1 | + | 105024 | 0.68 | 0.686345 |
Target: 5'- -aGCCGCGAAccAGCGGUugcgguggguuucgACCGUUAGg -3' miRNA: 3'- uaCGGCGUUUccUCGCCG--------------UGGCAGUC- -5' |
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33623 | 3' | -58 | NC_007605.1 | + | 110205 | 0.69 | 0.678294 |
Target: 5'- -cGCCGCGAcggcuguggguguGGGGGCGGCGgCGg--- -3' miRNA: 3'- uaCGGCGUU-------------UCCUCGCCGUgGCaguc -5' |
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33623 | 3' | -58 | NC_007605.1 | + | 103340 | 0.69 | 0.669209 |
Target: 5'- aAUGCgGCAGAGGcuaAGCGcCGCCGcCAGc -3' miRNA: 3'- -UACGgCGUUUCC---UCGCcGUGGCaGUC- -5' |
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33623 | 3' | -58 | NC_007605.1 | + | 124973 | 0.69 | 0.669209 |
Target: 5'- cUGCCGCAGGuucGaGAGCaGGUcggcauccACCGUCAGa -3' miRNA: 3'- uACGGCGUUU---C-CUCG-CCG--------UGGCAGUC- -5' |
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33623 | 3' | -58 | NC_007605.1 | + | 51686 | 0.7 | 0.628623 |
Target: 5'- -aGUgGCGGuGGAacaCGGCACCGUCAGc -3' miRNA: 3'- uaCGgCGUUuCCUc--GCCGUGGCAGUC- -5' |
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33623 | 3' | -58 | NC_007605.1 | + | 58135 | 0.71 | 0.538139 |
Target: 5'- -gGCCGCAGAGGc-CGGgGCCG-CAGa -3' miRNA: 3'- uaCGGCGUUUCCucGCCgUGGCaGUC- -5' |
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33623 | 3' | -58 | NC_007605.1 | + | 20520 | 0.71 | 0.528315 |
Target: 5'- -gGCCGCcGAGGGGCaGGCugCGgccgccCAGg -3' miRNA: 3'- uaCGGCGuUUCCUCG-CCGugGCa-----GUC- -5' |
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33623 | 3' | -58 | NC_007605.1 | + | 56417 | 0.72 | 0.48879 |
Target: 5'- -gGCgGCGGAGGccgagcagggacuGGCGGCACUGUgGGg -3' miRNA: 3'- uaCGgCGUUUCC-------------UCGCCGUGGCAgUC- -5' |
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33623 | 3' | -58 | NC_007605.1 | + | 159643 | 0.72 | 0.480298 |
Target: 5'- -cGCCGUGAAGGcGGCGGCGCaGUCc- -3' miRNA: 3'- uaCGGCGUUUCC-UCGCCGUGgCAGuc -5' |
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33623 | 3' | -58 | NC_007605.1 | + | 163978 | 1.07 | 0.002333 |
Target: 5'- gAUGCCGCAAAGGAGCGGCACCGUCAGg -3' miRNA: 3'- -UACGGCGUUUCCUCGCCGUGGCAGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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