miRNA display CGI


Results 21 - 37 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33623 5' -60.6 NC_007605.1 + 39408 0.66 0.76125
Target:  5'- cGCuCCGgGggcAGCCGGgcggCCgCCGGUG-GGu -3'
miRNA:   3'- -CG-GGCgCa--UCGGCCa---GG-GGUCACaCC- -5'
33623 5' -60.6 NC_007605.1 + 39533 0.66 0.76125
Target:  5'- cGCuCCGgGggcAGCCGGgcggCCgCCGGUG-GGu -3'
miRNA:   3'- -CG-GGCgCa--UCGGCCa---GG-GGUCACaCC- -5'
33623 5' -60.6 NC_007605.1 + 39658 0.66 0.76125
Target:  5'- cGCuCCGgGggcAGCCGGgcggCCgCCGGUG-GGu -3'
miRNA:   3'- -CG-GGCgCa--UCGGCCa---GG-GGUCACaCC- -5'
33623 5' -60.6 NC_007605.1 + 39033 0.66 0.76125
Target:  5'- cGCuCCGgGggcAGCCGGgcggCCgCCGGUG-GGu -3'
miRNA:   3'- -CG-GGCgCa--UCGGCCa---GG-GGUCACaCC- -5'
33623 5' -60.6 NC_007605.1 + 11822 0.66 0.752157
Target:  5'- uGCCCgggaGCGUcGCCuGG-CCCUGGUGcGGg -3'
miRNA:   3'- -CGGG----CGCAuCGG-CCaGGGGUCACaCC- -5'
33623 5' -60.6 NC_007605.1 + 110189 0.66 0.746655
Target:  5'- cGCCCGCc--GCCGc-CCCCgccgcgacggcugugGGUGUGGg -3'
miRNA:   3'- -CGGGCGcauCGGCcaGGGG---------------UCACACC- -5'
33623 5' -60.6 NC_007605.1 + 83311 0.67 0.733692
Target:  5'- aGCCUGgGgGGCCGGcggcuccugguaUCCCUGGUaUGGa -3'
miRNA:   3'- -CGGGCgCaUCGGCC------------AGGGGUCAcACC- -5'
33623 5' -60.6 NC_007605.1 + 91922 0.68 0.666971
Target:  5'- cUCCGaGUAGCgGG-CCUCGGUGUGa -3'
miRNA:   3'- cGGGCgCAUCGgCCaGGGGUCACACc -5'
33623 5' -60.6 NC_007605.1 + 98200 0.68 0.657277
Target:  5'- gGCCUG---GGCCGGg-CUCAGUGUGGa -3'
miRNA:   3'- -CGGGCgcaUCGGCCagGGGUCACACC- -5'
33623 5' -60.6 NC_007605.1 + 127157 0.68 0.628114
Target:  5'- gGCCUcggcgcauaGCGUgaAGUCGGUgUCCAgGUGUGGa -3'
miRNA:   3'- -CGGG---------CGCA--UCGGCCAgGGGU-CACACC- -5'
33623 5' -60.6 NC_007605.1 + 158175 0.69 0.608674
Target:  5'- cCCCGU-UGGCCaGGcCCCCGGUG-GGc -3'
miRNA:   3'- cGGGCGcAUCGG-CCaGGGGUCACaCC- -5'
33623 5' -60.6 NC_007605.1 + 8864 0.69 0.589297
Target:  5'- cGCuCUGCGagGGCCGGgCCCCGgccGUGUGc -3'
miRNA:   3'- -CG-GGCGCa-UCGGCCaGGGGU---CACACc -5'
33623 5' -60.6 NC_007605.1 + 169068 0.69 0.570033
Target:  5'- uGUuuGUGUuagaaaAGCgGGUCCCCGGggggcaagcUGUGGg -3'
miRNA:   3'- -CGggCGCA------UCGgCCAGGGGUC---------ACACC- -5'
33623 5' -60.6 NC_007605.1 + 39598 0.7 0.53202
Target:  5'- aGCCC-CGUAGCCGGgaguguggCCCCAGc---- -3'
miRNA:   3'- -CGGGcGCAUCGGCCa-------GGGGUCacacc -5'
33623 5' -60.6 NC_007605.1 + 83234 0.71 0.467951
Target:  5'- aGCCCGUG-GGCCGGcggcuccugguaUCCCUGGUaUGGa -3'
miRNA:   3'- -CGGGCGCaUCGGCC------------AGGGGUCAcACC- -5'
33623 5' -60.6 NC_007605.1 + 59120 0.72 0.416343
Target:  5'- uUCCGCGcacggGGCCGGuUCCCCGG-GUGc -3'
miRNA:   3'- cGGGCGCa----UCGGCC-AGGGGUCaCACc -5'
33623 5' -60.6 NC_007605.1 + 164013 1.1 0.001197
Target:  5'- gGCCCGCGUAGCCGGUCCCCAGUGUGGc -3'
miRNA:   3'- -CGGGCGCAUCGGCCAGGGGUCACACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.