miRNA display CGI


Results 21 - 40 of 304 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33624 5' -70.5 NC_007605.1 + 34209 0.66 0.332973
Target:  5'- aCCCGggucuCGGCCagCCgAGCCgaccggCCCCGCGCc -3'
miRNA:   3'- -GGGC-----GCCGGg-GGgUCGGg-----GGGGCGUG- -5'
33624 5' -70.5 NC_007605.1 + 26826 0.66 0.351618
Target:  5'- aCCGaagugaaGGCCCuggaccaacccggcCCgGGCCCCCCgGUAUc -3'
miRNA:   3'- gGGCg------CCGGG--------------GGgUCGGGGGGgCGUG- -5'
33624 5' -70.5 NC_007605.1 + 66262 0.66 0.339793
Target:  5'- gCCCGCuGCCaCCUCucugccaggGGCgCCCCCGUg- -3'
miRNA:   3'- -GGGCGcCGG-GGGG---------UCGgGGGGGCGug -5'
33624 5' -70.5 NC_007605.1 + 121478 0.66 0.319636
Target:  5'- aUCCGCcGCCUCCCAGCUgCCCaaaauGC-Ca -3'
miRNA:   3'- -GGGCGcCGGGGGGUCGGgGGGg----CGuG- -5'
33624 5' -70.5 NC_007605.1 + 165500 0.66 0.332973
Target:  5'- cCCCGUGGCCCacaCCuGCCCaaugucCUCUGCc- -3'
miRNA:   3'- -GGGCGCCGGGg--GGuCGGG------GGGGCGug -5'
33624 5' -70.5 NC_007605.1 + 118669 0.66 0.346714
Target:  5'- cCCCaGcCGGaCgCCCCCaAGCUauugguCCCCCGCAg -3'
miRNA:   3'- -GGG-C-GCC-G-GGGGG-UCGG------GGGGGCGUg -5'
33624 5' -70.5 NC_007605.1 + 12727 0.66 0.332973
Target:  5'- aCCCGggucuCGGCCagCCgAGCCgaccggCCCCGCGCc -3'
miRNA:   3'- -GGGC-----GCCGGg-GGgUCGGg-----GGGGCGUG- -5'
33624 5' -70.5 NC_007605.1 + 32579 0.66 0.31312
Target:  5'- ----aGaGCCCCCCc-CCCCCCCGUAUa -3'
miRNA:   3'- gggcgC-CGGGGGGucGGGGGGGCGUG- -5'
33624 5' -70.5 NC_007605.1 + 23757 0.66 0.351618
Target:  5'- aCCGaagugaaGGCCCuggaccaacccggcCCgGGCCCCCCgGUAUc -3'
miRNA:   3'- gGGCg------CCGGG--------------GGgUCGGGGGGgCGUG- -5'
33624 5' -70.5 NC_007605.1 + 28071 0.66 0.332973
Target:  5'- aCCCGggucuCGGCCagCCgAGCCgaccggCCCCGCGCc -3'
miRNA:   3'- -GGGC-----GCCGGg-GGgUCGGg-----GGGGCGUG- -5'
33624 5' -70.5 NC_007605.1 + 25002 0.66 0.332973
Target:  5'- aCCCGggucuCGGCCagCCgAGCCgaccggCCCCGCGCc -3'
miRNA:   3'- -GGGC-----GCCGGg-GGgUCGGg-----GGGGCGUG- -5'
33624 5' -70.5 NC_007605.1 + 17121 0.66 0.326254
Target:  5'- aUCCGCGuGUUCUCCuGCCUCCUgGCGg -3'
miRNA:   3'- -GGGCGC-CGGGGGGuCGGGGGGgCGUg -5'
33624 5' -70.5 NC_007605.1 + 110756 0.66 0.319636
Target:  5'- -aCGgGGCCCCUCcgaugccugggAGUCCCCCCagGCGg -3'
miRNA:   3'- ggGCgCCGGGGGG-----------UCGGGGGGG--CGUg -5'
33624 5' -70.5 NC_007605.1 + 79900 0.66 0.31312
Target:  5'- cCCCGC-GCCUgCgGGCCCCaaagUCGCGCc -3'
miRNA:   3'- -GGGCGcCGGGgGgUCGGGGg---GGCGUG- -5'
33624 5' -70.5 NC_007605.1 + 15796 0.66 0.332973
Target:  5'- aCCCGggucuCGGCCagCCgAGCCgaccggCCCCGCGCc -3'
miRNA:   3'- -GGGC-----GCCGGg-GGgUCGGg-----GGGGCGUG- -5'
33624 5' -70.5 NC_007605.1 + 60289 0.66 0.332973
Target:  5'- gCCGUGGCCagggCCCaccuggcggcGGCgUCCCgGCACa -3'
miRNA:   3'- gGGCGCCGGg---GGG----------UCGgGGGGgCGUG- -5'
33624 5' -70.5 NC_007605.1 + 50406 0.66 0.326254
Target:  5'- cCCCGUGGCCUuuggcacgggCCUGGCaCCCaCCGCu- -3'
miRNA:   3'- -GGGCGCCGGG----------GGGUCGgGGG-GGCGug -5'
33624 5' -70.5 NC_007605.1 + 108548 0.66 0.326254
Target:  5'- aCCCcCGGCgaccgccaccuCCCCCggGGCCagcagCCCUGCGCg -3'
miRNA:   3'- -GGGcGCCG-----------GGGGG--UCGGg----GGGGCGUG- -5'
33624 5' -70.5 NC_007605.1 + 151121 0.66 0.312474
Target:  5'- cCCCucgGCGGCCcgugCCCCAGCUCCgUCacgggggGCGCa -3'
miRNA:   3'- -GGG---CGCCGG----GGGGUCGGGGgGG-------CGUG- -5'
33624 5' -70.5 NC_007605.1 + 123867 0.66 0.353735
Target:  5'- gCCCaGCggacaaGGCCCCCgGGCCUCUCCa--- -3'
miRNA:   3'- -GGG-CG------CCGGGGGgUCGGGGGGGcgug -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.