Results 21 - 40 of 304 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33624 | 5' | -70.5 | NC_007605.1 | + | 75074 | 0.66 | 0.332973 |
Target: 5'- aCCC-CGGCCUCCaCuGCCUCCUCG-ACc -3' miRNA: 3'- -GGGcGCCGGGGG-GuCGGGGGGGCgUG- -5' |
|||||||
33624 | 5' | -70.5 | NC_007605.1 | + | 12727 | 0.66 | 0.332973 |
Target: 5'- aCCCGggucuCGGCCagCCgAGCCgaccggCCCCGCGCc -3' miRNA: 3'- -GGGC-----GCCGGg-GGgUCGGg-----GGGGCGUG- -5' |
|||||||
33624 | 5' | -70.5 | NC_007605.1 | + | 15796 | 0.66 | 0.332973 |
Target: 5'- aCCCGggucuCGGCCagCCgAGCCgaccggCCCCGCGCc -3' miRNA: 3'- -GGGC-----GCCGGg-GGgUCGGg-----GGGGCGUG- -5' |
|||||||
33624 | 5' | -70.5 | NC_007605.1 | + | 60289 | 0.66 | 0.332973 |
Target: 5'- gCCGUGGCCagggCCCaccuggcggcGGCgUCCCgGCACa -3' miRNA: 3'- gGGCGCCGGg---GGG----------UCGgGGGGgCGUG- -5' |
|||||||
33624 | 5' | -70.5 | NC_007605.1 | + | 25002 | 0.66 | 0.332973 |
Target: 5'- aCCCGggucuCGGCCagCCgAGCCgaccggCCCCGCGCc -3' miRNA: 3'- -GGGC-----GCCGGg-GGgUCGGg-----GGGGCGUG- -5' |
|||||||
33624 | 5' | -70.5 | NC_007605.1 | + | 18865 | 0.66 | 0.332973 |
Target: 5'- aCCCGggucuCGGCCagCCgAGCCgaccggCCCCGCGCc -3' miRNA: 3'- -GGGC-----GCCGGg-GGgUCGGg-----GGGGCGUG- -5' |
|||||||
33624 | 5' | -70.5 | NC_007605.1 | + | 34209 | 0.66 | 0.332973 |
Target: 5'- aCCCGggucuCGGCCagCCgAGCCgaccggCCCCGCGCc -3' miRNA: 3'- -GGGC-----GCCGGg-GGgUCGGg-----GGGGCGUG- -5' |
|||||||
33624 | 5' | -70.5 | NC_007605.1 | + | 31140 | 0.66 | 0.332973 |
Target: 5'- aCCCGggucuCGGCCagCCgAGCCgaccggCCCCGCGCc -3' miRNA: 3'- -GGGC-----GCCGGg-GGgUCGGg-----GGGGCGUG- -5' |
|||||||
33624 | 5' | -70.5 | NC_007605.1 | + | 165500 | 0.66 | 0.332973 |
Target: 5'- cCCCGUGGCCCacaCCuGCCCaaugucCUCUGCc- -3' miRNA: 3'- -GGGCGCCGGGg--GGuCGGG------GGGGCGug -5' |
|||||||
33624 | 5' | -70.5 | NC_007605.1 | + | 50406 | 0.66 | 0.326254 |
Target: 5'- cCCCGUGGCCUuuggcacgggCCUGGCaCCCaCCGCu- -3' miRNA: 3'- -GGGCGCCGGG----------GGGUCGgGGG-GGCGug -5' |
|||||||
33624 | 5' | -70.5 | NC_007605.1 | + | 159519 | 0.66 | 0.326254 |
Target: 5'- gCCGgGGCaCCUCCgGGCUCUCCCGgGa -3' miRNA: 3'- gGGCgCCG-GGGGG-UCGGGGGGGCgUg -5' |
|||||||
33624 | 5' | -70.5 | NC_007605.1 | + | 17121 | 0.66 | 0.326254 |
Target: 5'- aUCCGCGuGUUCUCCuGCCUCCUgGCGg -3' miRNA: 3'- -GGGCGC-CGGGGGGuCGGGGGGgCGUg -5' |
|||||||
33624 | 5' | -70.5 | NC_007605.1 | + | 108877 | 0.66 | 0.326254 |
Target: 5'- gUCUGgGGacgaCCCCgCuGCCCgCCUGCGCg -3' miRNA: 3'- -GGGCgCCg---GGGG-GuCGGGgGGGCGUG- -5' |
|||||||
33624 | 5' | -70.5 | NC_007605.1 | + | 36431 | 0.66 | 0.326254 |
Target: 5'- gCCCGggugGGCUUCCCGGCagaggCCCUGCGCc -3' miRNA: 3'- -GGGCg---CCGGGGGGUCGgg---GGGGCGUG- -5' |
|||||||
33624 | 5' | -70.5 | NC_007605.1 | + | 108548 | 0.66 | 0.326254 |
Target: 5'- aCCCcCGGCgaccgccaccuCCCCCggGGCCagcagCCCUGCGCg -3' miRNA: 3'- -GGGcGCCG-----------GGGGG--UCGGg----GGGGCGUG- -5' |
|||||||
33624 | 5' | -70.5 | NC_007605.1 | + | 110756 | 0.66 | 0.319636 |
Target: 5'- -aCGgGGCCCCUCcgaugccugggAGUCCCCCCagGCGg -3' miRNA: 3'- ggGCgCCGGGGGG-----------UCGGGGGGG--CGUg -5' |
|||||||
33624 | 5' | -70.5 | NC_007605.1 | + | 121478 | 0.66 | 0.319636 |
Target: 5'- aUCCGCcGCCUCCCAGCUgCCCaaaauGC-Ca -3' miRNA: 3'- -GGGCGcCGGGGGGUCGGgGGGg----CGuG- -5' |
|||||||
33624 | 5' | -70.5 | NC_007605.1 | + | 32579 | 0.66 | 0.31312 |
Target: 5'- ----aGaGCCCCCCc-CCCCCCCGUAUa -3' miRNA: 3'- gggcgC-CGGGGGGucGGGGGGGCGUG- -5' |
|||||||
33624 | 5' | -70.5 | NC_007605.1 | + | 5591 | 0.66 | 0.31312 |
Target: 5'- cCCCGCcuuugGGCaCCCCacgggguGCuCCCCCUGgACa -3' miRNA: 3'- -GGGCG-----CCG-GGGGgu-----CG-GGGGGGCgUG- -5' |
|||||||
33624 | 5' | -70.5 | NC_007605.1 | + | 79900 | 0.66 | 0.31312 |
Target: 5'- cCCCGC-GCCUgCgGGCCCCaaagUCGCGCc -3' miRNA: 3'- -GGGCGcCGGGgGgUCGGGGg---GGCGUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home