Results 1 - 20 of 119 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33625 | 3' | -57.7 | NC_007605.1 | + | 169763 | 1.11 | 0.001874 |
Target: 5'- aGGGUAGAAUGACAGGGGGCGGGGACAg -3' miRNA: 3'- -CCCAUCUUACUGUCCCCCGCCCCUGU- -5' |
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33625 | 3' | -57.7 | NC_007605.1 | + | 170301 | 1.11 | 0.001874 |
Target: 5'- aGGGUAGAAUGACAGGGGGCGGGGACAg -3' miRNA: 3'- -CCCAUCUUACUGUCCCCCGCCCCUGU- -5' |
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33625 | 3' | -57.7 | NC_007605.1 | + | 170823 | 1.11 | 0.001874 |
Target: 5'- aGGGUAGAAUGACAGGGGGCGGGGACAg -3' miRNA: 3'- -CCCAUCUUACUGUCCCCCGCCCCUGU- -5' |
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33625 | 3' | -57.7 | NC_007605.1 | + | 171361 | 1.11 | 0.001874 |
Target: 5'- aGGGUAGAAUGACAGGGGGCGGGGACAg -3' miRNA: 3'- -CCCAUCUUACUGUCCCCCGCCCCUGU- -5' |
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33625 | 3' | -57.7 | NC_007605.1 | + | 154926 | 0.82 | 0.153252 |
Target: 5'- cGGGacUGGggUGGacacaGGGGGGCGGGGAUg -3' miRNA: 3'- -CCC--AUCuuACUg----UCCCCCGCCCCUGu -5' |
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33625 | 3' | -57.7 | NC_007605.1 | + | 151857 | 0.82 | 0.153252 |
Target: 5'- cGGGacUGGggUGGacacaGGGGGGCGGGGAUg -3' miRNA: 3'- -CCC--AUCuuACUg----UCCCCCGCCCCUGu -5' |
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33625 | 3' | -57.7 | NC_007605.1 | + | 148788 | 0.82 | 0.153252 |
Target: 5'- cGGGacUGGggUGGacacaGGGGGGCGGGGAUg -3' miRNA: 3'- -CCC--AUCuuACUg----UCCCCCGCCCCUGu -5' |
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33625 | 3' | -57.7 | NC_007605.1 | + | 145719 | 0.82 | 0.153252 |
Target: 5'- cGGGacUGGggUGGacacaGGGGGGCGGGGAUg -3' miRNA: 3'- -CCC--AUCuuACUg----UCCCCCGCCCCUGu -5' |
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33625 | 3' | -57.7 | NC_007605.1 | + | 136513 | 0.82 | 0.153252 |
Target: 5'- cGGGacUGGggUGGacacaGGGGGGCGGGGAUg -3' miRNA: 3'- -CCC--AUCuuACUg----UCCCCCGCCCCUGu -5' |
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33625 | 3' | -57.7 | NC_007605.1 | + | 139582 | 0.82 | 0.153252 |
Target: 5'- cGGGacUGGggUGGacacaGGGGGGCGGGGAUg -3' miRNA: 3'- -CCC--AUCuuACUg----UCCCCCGCCCCUGu -5' |
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33625 | 3' | -57.7 | NC_007605.1 | + | 157995 | 0.82 | 0.153252 |
Target: 5'- cGGGacUGGggUGGacacaGGGGGGCGGGGAUg -3' miRNA: 3'- -CCC--AUCuuACUg----UCCCCCGCCCCUGu -5' |
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33625 | 3' | -57.7 | NC_007605.1 | + | 142651 | 0.82 | 0.153252 |
Target: 5'- cGGGacUGGggUGGacacaGGGGGGCGGGGAUg -3' miRNA: 3'- -CCC--AUCuuACUg----UCCCCCGCCCCUGu -5' |
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33625 | 3' | -57.7 | NC_007605.1 | + | 10812 | 0.79 | 0.226619 |
Target: 5'- uGGGUGGAGgagGGCAGGGcucCGGGGGCAg -3' miRNA: 3'- -CCCAUCUUa--CUGUCCCcc-GCCCCUGU- -5' |
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33625 | 3' | -57.7 | NC_007605.1 | + | 57737 | 0.77 | 0.292871 |
Target: 5'- gGGGUGGggUGuCGGGGaGGCGGGuGGu- -3' miRNA: 3'- -CCCAUCuuACuGUCCC-CCGCCC-CUgu -5' |
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33625 | 3' | -57.7 | NC_007605.1 | + | 131640 | 0.77 | 0.320464 |
Target: 5'- cGGGUGGGAgcaGGgAGGGGGCGucccGGGACc -3' miRNA: 3'- -CCCAUCUUa--CUgUCCCCCGC----CCCUGu -5' |
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33625 | 3' | -57.7 | NC_007605.1 | + | 95460 | 0.75 | 0.372521 |
Target: 5'- aGGGgauGAggGugGGGGGGCuguuggaGGGGGCAg -3' miRNA: 3'- -CCCau-CUuaCugUCCCCCG-------CCCCUGU- -5' |
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33625 | 3' | -57.7 | NC_007605.1 | + | 40146 | 0.75 | 0.389467 |
Target: 5'- cGGUgcaccuGGAA-GGCAGGGGG-GGGGGCAg -3' miRNA: 3'- cCCA------UCUUaCUGUCCCCCgCCCCUGU- -5' |
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33625 | 3' | -57.7 | NC_007605.1 | + | 135263 | 0.74 | 0.430911 |
Target: 5'- gGGGUGGug-GugGGGGGGguggugggaguggUGGGGGCAc -3' miRNA: 3'- -CCCAUCuuaCugUCCCCC-------------GCCCCUGU- -5' |
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33625 | 3' | -57.7 | NC_007605.1 | + | 171288 | 0.74 | 0.431783 |
Target: 5'- gGGGcAGggUcGCAGGGGGUgugucugguGGGGGCGg -3' miRNA: 3'- -CCCaUCuuAcUGUCCCCCG---------CCCCUGU- -5' |
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33625 | 3' | -57.7 | NC_007605.1 | + | 150197 | 0.74 | 0.431783 |
Target: 5'- aGGUgAGAGU--CGGGGGGCGGGcGACGg -3' miRNA: 3'- cCCA-UCUUAcuGUCCCCCGCCC-CUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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