miRNA display CGI


Results 81 - 100 of 309 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33625 5' -66.2 NC_007605.1 + 49606 0.67 0.409766
Target:  5'- cCGcCGCCUCCGccGCCGCaGCCgucgauaccgGGUCAGGUg -3'
miRNA:   3'- -GC-GCGGGGGC--CGGCG-CGG----------UCGGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 96847 0.67 0.417852
Target:  5'- aCGUGCCCCCGGgaGCGauagAGCaGGGCc -3'
miRNA:   3'- -GCGCGGGGGCCggCGCgg--UCGgUUCG- -5'
33625 5' -66.2 NC_007605.1 + 74828 0.67 0.42357
Target:  5'- cCGCGUCCCUGagaGCUGUcgugggugguggagGCCcagguGGCCAAGCu -3'
miRNA:   3'- -GCGCGGGGGC---CGGCG--------------CGG-----UCGGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 75158 0.67 0.426035
Target:  5'- -cCGCCuCCCGuGgUGCGgCAGCCgGAGCa -3'
miRNA:   3'- gcGCGG-GGGC-CgGCGCgGUCGG-UUCG- -5'
33625 5' -66.2 NC_007605.1 + 154673 0.67 0.434313
Target:  5'- uGCGCCCCuCGGggcCCGUGCaaagaGGCgAGGa -3'
miRNA:   3'- gCGCGGGG-GCC---GGCGCGg----UCGgUUCg -5'
33625 5' -66.2 NC_007605.1 + 117214 0.67 0.434313
Target:  5'- uCG-GCCCUCGcGCagaCGCGCCAGgCCcuGCa -3'
miRNA:   3'- -GCgCGGGGGC-CG---GCGCGGUC-GGuuCG- -5'
33625 5' -66.2 NC_007605.1 + 131336 0.67 0.434313
Target:  5'- cCGgGCCCCUGGUgGC-UCGGCCGcGGUc -3'
miRNA:   3'- -GCgCGGGGGCCGgCGcGGUCGGU-UCG- -5'
33625 5' -66.2 NC_007605.1 + 132393 0.67 0.442683
Target:  5'- uCGCcaGCCgCCGGgCGgGCCGGCCu--- -3'
miRNA:   3'- -GCG--CGGgGGCCgGCgCGGUCGGuucg -5'
33625 5' -66.2 NC_007605.1 + 51575 0.67 0.440162
Target:  5'- uCGUGaggCCCCGGCCGCGUUAaaguagaacugcacGUCcGGCa -3'
miRNA:   3'- -GCGCg--GGGGCCGGCGCGGU--------------CGGuUCG- -5'
33625 5' -66.2 NC_007605.1 + 55056 0.67 0.434313
Target:  5'- --aGCCUUCGGCCuccagGCGCCAGgCCu-GCa -3'
miRNA:   3'- gcgCGGGGGCCGG-----CGCGGUC-GGuuCG- -5'
33625 5' -66.2 NC_007605.1 + 28195 0.67 0.434313
Target:  5'- --aGCCCCUcgGGCC-CGCCu-CCAGGCg -3'
miRNA:   3'- gcgCGGGGG--CCGGcGCGGucGGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 115743 0.67 0.434313
Target:  5'- aCGUGCCCCgauggcuaGGCCGU-CCGGCagcaugcccCGAGCa -3'
miRNA:   3'- -GCGCGGGGg-------CCGGCGcGGUCG---------GUUCG- -5'
33625 5' -66.2 NC_007605.1 + 31264 0.67 0.434313
Target:  5'- --aGCCCCUcgGGCC-CGCCu-CCAGGCg -3'
miRNA:   3'- gcgCGGGGG--CCGGcGCGGucGGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 18988 0.67 0.434313
Target:  5'- --aGCCCCUcgGGCC-CGCCu-CCAGGCg -3'
miRNA:   3'- gcgCGGGGG--CCGGcGCGGucGGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 10911 0.67 0.417852
Target:  5'- gGgGCUgCUGGCgGCGgcguaCAGCCAGGUg -3'
miRNA:   3'- gCgCGGgGGCCGgCGCg----GUCGGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 21338 0.67 0.417852
Target:  5'- uGCGCUCUucUGGCCG-GCCgAGCgAAGUg -3'
miRNA:   3'- gCGCGGGG--GCCGGCgCGG-UCGgUUCG- -5'
33625 5' -66.2 NC_007605.1 + 108588 0.67 0.417852
Target:  5'- gCGCGCCagaCGGCCGCcGCacuCAGCgAGGa -3'
miRNA:   3'- -GCGCGGgg-GCCGGCG-CG---GUCGgUUCg -5'
33625 5' -66.2 NC_007605.1 + 117785 0.67 0.417852
Target:  5'- gGCuCCCCUcgaGGCCGCcCUGGcCCGGGCa -3'
miRNA:   3'- gCGcGGGGG---CCGGCGcGGUC-GGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 36798 0.67 0.426035
Target:  5'- aGgGCCUCUGGCa-CGCCguGGCCcuGAGCa -3'
miRNA:   3'- gCgCGGGGGCCGgcGCGG--UCGG--UUCG- -5'
33625 5' -66.2 NC_007605.1 + 103044 0.67 0.434313
Target:  5'- gGUGUCUCUGGCCuuGCCGGacucucCCAAGUa -3'
miRNA:   3'- gCGCGGGGGCCGGcgCGGUC------GGUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.