miRNA display CGI


Results 101 - 120 of 309 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33625 5' -66.2 NC_007605.1 + 168456 0.67 0.401778
Target:  5'- cCGUGgCCCUGGCCG-GCCccauuucuCCGAGCc -3'
miRNA:   3'- -GCGCgGGGGCCGGCgCGGuc------GGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 10782 0.67 0.409766
Target:  5'- cCGCGUcgcaggCCUCGGCCGgGCUgcuGCUggGUg -3'
miRNA:   3'- -GCGCG------GGGGCCGGCgCGGu--CGGuuCG- -5'
33625 5' -66.2 NC_007605.1 + 66970 0.67 0.409766
Target:  5'- --gGCCCCCgGGCgGCGCCGaaaCAGGUu -3'
miRNA:   3'- gcgCGGGGG-CCGgCGCGGUcg-GUUCG- -5'
33625 5' -66.2 NC_007605.1 + 65698 0.67 0.409766
Target:  5'- gGaCGCCCgaCGGCacCGCGUCAGCCugaaaauucuuGAGCc -3'
miRNA:   3'- gC-GCGGGg-GCCG--GCGCGGUCGG-----------UUCG- -5'
33625 5' -66.2 NC_007605.1 + 95356 0.67 0.401778
Target:  5'- cCGCGUUugugggaCUGGaaGCGCCGGCCGgcAGCa -3'
miRNA:   3'- -GCGCGGg------GGCCggCGCGGUCGGU--UCG- -5'
33625 5' -66.2 NC_007605.1 + 108588 0.67 0.417852
Target:  5'- gCGCGCCagaCGGCCGCcGCacuCAGCgAGGa -3'
miRNA:   3'- -GCGCGGgg-GCCGGCG-CG---GUCGgUUCg -5'
33625 5' -66.2 NC_007605.1 + 117785 0.67 0.417852
Target:  5'- gGCuCCCCUcgaGGCCGCcCUGGcCCGGGCa -3'
miRNA:   3'- gCGcGGGGG---CCGGCGcGGUC-GGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 170959 0.67 0.401778
Target:  5'- gGgGCUCCgGGgUGaC-CCAGCCAAGCg -3'
miRNA:   3'- gCgCGGGGgCCgGC-GcGGUCGGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 170437 0.67 0.401778
Target:  5'- gGgGCUCCgGGgUGaC-CCAGCCAAGCg -3'
miRNA:   3'- gCgCGGGGgCCgGC-GcGGUCGGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 131336 0.67 0.434313
Target:  5'- cCGgGCCCCUGGUgGC-UCGGCCGcGGUc -3'
miRNA:   3'- -GCgCGGGGGCCGgCGcGGUCGGU-UCG- -5'
33625 5' -66.2 NC_007605.1 + 103044 0.67 0.434313
Target:  5'- gGUGUCUCUGGCCuuGCCGGacucucCCAAGUa -3'
miRNA:   3'- gCGCGGGGGCCGGcgCGGUC------GGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 104473 0.67 0.426035
Target:  5'- gGUgGCCCuuGGUCG-GUCAGCCuuGGCu -3'
miRNA:   3'- gCG-CGGGggCCGGCgCGGUCGGu-UCG- -5'
33625 5' -66.2 NC_007605.1 + 50381 0.67 0.442683
Target:  5'- gGcCGUCCCgGGCCucuacaGCCccuGCCGGGCa -3'
miRNA:   3'- gC-GCGGGGgCCGGcg----CGGu--CGGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 131394 0.67 0.451143
Target:  5'- gGCuGCCCCCuggaccccuaGGCCuGUGCCAuggggacccccuGCCAgucGGCg -3'
miRNA:   3'- gCG-CGGGGG----------CCGG-CGCGGU------------CGGU---UCG- -5'
33625 5' -66.2 NC_007605.1 + 39522 0.67 0.450293
Target:  5'- uCGUGCCCCUuuacccugcccagGGgaGC-CCAGCCAccAGCa -3'
miRNA:   3'- -GCGCGGGGG-------------CCggCGcGGUCGGU--UCG- -5'
33625 5' -66.2 NC_007605.1 + 117214 0.67 0.434313
Target:  5'- uCG-GCCCUCGcGCagaCGCGCCAGgCCcuGCa -3'
miRNA:   3'- -GCgCGGGGGC-CG---GCGCGGUC-GGuuCG- -5'
33625 5' -66.2 NC_007605.1 + 118207 0.68 0.355984
Target:  5'- gGgGCCacaCCGacCCGCGCCAGCuCAAGa -3'
miRNA:   3'- gCgCGGg--GGCc-GGCGCGGUCG-GUUCg -5'
33625 5' -66.2 NC_007605.1 + 108033 0.68 0.355984
Target:  5'- cCGCcaCCCCCGGCgC-CGCCggagAGCCAcGCg -3'
miRNA:   3'- -GCGc-GGGGGCCG-GcGCGG----UCGGUuCG- -5'
33625 5' -66.2 NC_007605.1 + 86434 0.68 0.393889
Target:  5'- gGCGCCCCCcgaGGCCucUGCCGGggaaCGGGUg -3'
miRNA:   3'- gCGCGGGGG---CCGGc-GCGGUCg---GUUCG- -5'
33625 5' -66.2 NC_007605.1 + 20240 0.68 0.393889
Target:  5'- aCGaGgCCCUGGCCGUGgCCAGguaCGGGCu -3'
miRNA:   3'- -GCgCgGGGGCCGGCGC-GGUCg--GUUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.