miRNA display CGI


Results 41 - 60 of 309 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33625 5' -66.2 NC_007605.1 + 28858 0.73 0.19225
Target:  5'- uGgGCCaCCCGGCCGC-CCc-CCGAGCu -3'
miRNA:   3'- gCgCGG-GGGCCGGCGcGGucGGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 143146 0.73 0.18352
Target:  5'- uGCGCUCCCaGGCCG-GaCCcugguGCCAGGCa -3'
miRNA:   3'- gCGCGGGGG-CCGGCgC-GGu----CGGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 40331 0.73 0.18352
Target:  5'- uGCGCUCCCaGGCCG-GaCCcugguGCCAGGCa -3'
miRNA:   3'- gCGCGGGGG-CCGGCgC-GGu----CGGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 30386 0.73 0.19225
Target:  5'- uGgGCCaCCCGGCCGC-CCc-CCGAGCu -3'
miRNA:   3'- gCgCGG-GGGCCGGCGcGGucGGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 60263 0.73 0.183093
Target:  5'- gGCGCCUUCugaggguGGCCGUGUCGGCCGuGGCc -3'
miRNA:   3'- gCGCGGGGG-------CCGGCGCGGUCGGU-UCG- -5'
33625 5' -66.2 NC_007605.1 + 30896 0.73 0.19225
Target:  5'- uGgGCCaCCCGGCCGC-CCc-CCGAGCu -3'
miRNA:   3'- gCgCGG-GGGCCGGCGcGGucGGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 113482 0.73 0.175143
Target:  5'- uGCGgCCCCGGCCucuGCGgccCCGGCCucuGCg -3'
miRNA:   3'- gCGCgGGGGCCGG---CGC---GGUCGGuu-CG- -5'
33625 5' -66.2 NC_007605.1 + 28552 0.73 0.19225
Target:  5'- uGgGCCaCCCGGCCGC-CCc-CCGAGCu -3'
miRNA:   3'- gCgCGG-GGGCCGGCGcGGucGGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 28654 0.73 0.19225
Target:  5'- uGgGCCaCCCGGCCGC-CCc-CCGAGCu -3'
miRNA:   3'- gCgCGG-GGGCCGGCGcGGucGGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 28756 0.73 0.19225
Target:  5'- uGgGCCaCCCGGCCGC-CCc-CCGAGCu -3'
miRNA:   3'- gCgCGG-GGGCCGGCGcGGucGGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 71821 0.72 0.206025
Target:  5'- -aUGCCCCCGGCUccacgGCcCCGGCCAcuGGCc -3'
miRNA:   3'- gcGCGGGGGCCGG-----CGcGGUCGGU--UCG- -5'
33625 5' -66.2 NC_007605.1 + 99161 0.72 0.215677
Target:  5'- cCGagGCCgCCGGCuccCGCGCCGGUCAGGg -3'
miRNA:   3'- -GCg-CGGgGGCCG---GCGCGGUCGGUUCg -5'
33625 5' -66.2 NC_007605.1 + 73315 0.72 0.215677
Target:  5'- -cUGgCCCCGGCaggugGCcugGCCGGCCAAGCa -3'
miRNA:   3'- gcGCgGGGGCCGg----CG---CGGUCGGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 101165 0.72 0.220646
Target:  5'- uGCGgCCCCGGCgGUagaGUgggguacgCAGCCAGGCg -3'
miRNA:   3'- gCGCgGGGGCCGgCG---CG--------GUCGGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 50371 0.72 0.220646
Target:  5'- gGCuGCCCCCgaGGacggGCGCCGGCCGccAGCg -3'
miRNA:   3'- gCG-CGGGGG--CCgg--CGCGGUCGGU--UCG- -5'
33625 5' -66.2 NC_007605.1 + 29905 0.72 0.201341
Target:  5'- aGgGCCggaaccccggaCCCGGCUGCaGCCGGCCAcccccgccggAGCg -3'
miRNA:   3'- gCgCGG-----------GGGCCGGCG-CGGUCGGU----------UCG- -5'
33625 5' -66.2 NC_007605.1 + 68091 0.72 0.201341
Target:  5'- uGCcaugaucuCCCCCGGUCGCGCUcGCgGGGCa -3'
miRNA:   3'- gCGc-------GGGGGCCGGCGCGGuCGgUUCG- -5'
33625 5' -66.2 NC_007605.1 + 28580 0.72 0.206025
Target:  5'- aGgGCCggaaccccggaCCCGGCUGCaGCCGGCCAccccccgccggAGCg -3'
miRNA:   3'- gCgCGG-----------GGGCCGGCG-CGGUCGGU-----------UCG- -5'
33625 5' -66.2 NC_007605.1 + 11011 0.72 0.196749
Target:  5'- uGCGCaaCgCCGGCC-UGCUGGCCGAGCu -3'
miRNA:   3'- gCGCG--GgGGCCGGcGCGGUCGGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 30924 0.72 0.201341
Target:  5'- aGgGCCggaaccccgaCCCGGCUGCaGCCGGCCAccccccgccggAGCg -3'
miRNA:   3'- gCgCGG----------GGGCCGGCG-CGGUCGGU-----------UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.