miRNA display CGI


Results 61 - 80 of 309 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33625 5' -66.2 NC_007605.1 + 71821 0.72 0.206025
Target:  5'- -aUGCCCCCGGCUccacgGCcCCGGCCAcuGGCc -3'
miRNA:   3'- gcGCGGGGGCCGG-----CGcGGUCGGU--UCG- -5'
33625 5' -66.2 NC_007605.1 + 28784 0.72 0.206025
Target:  5'- aGgGCCggaaccccggaCCCGGCUGCaGCCGGCCAccccccgccggAGCg -3'
miRNA:   3'- gCgCGG-----------GGGCCGGCG-CGGUCGGU-----------UCG- -5'
33625 5' -66.2 NC_007605.1 + 28682 0.72 0.206025
Target:  5'- aGgGCCggaaccccggaCCCGGCUGCaGCCGGCCAccccccgccggAGCg -3'
miRNA:   3'- gCgCGG-----------GGGCCGGCG-CGGUCGGU-----------UCG- -5'
33625 5' -66.2 NC_007605.1 + 28580 0.72 0.206025
Target:  5'- aGgGCCggaaccccggaCCCGGCUGCaGCCGGCCAccccccgccggAGCg -3'
miRNA:   3'- gCgCGG-----------GGGCCGGCG-CGGUCGGU-----------UCG- -5'
33625 5' -66.2 NC_007605.1 + 30516 0.72 0.206025
Target:  5'- aGgGCCggaaccccggaCCCGGCUGCaGCCGGCCAccccccgccggAGCg -3'
miRNA:   3'- gCgCGG-----------GGGCCGGCG-CGGUCGGU-----------UCG- -5'
33625 5' -66.2 NC_007605.1 + 30312 0.72 0.206025
Target:  5'- aGgGCCggaaccccggaCCCGGCUGCaGCCGGCCAccccccgccggAGCg -3'
miRNA:   3'- gCgCGG-----------GGGCCGGCG-CGGUCGGU-----------UCG- -5'
33625 5' -66.2 NC_007605.1 + 28886 0.72 0.206025
Target:  5'- aGgGCCggaaccccggaCCCGGCUGCaGCCGGCCAccccccgccggAGCg -3'
miRNA:   3'- gCgCGG-----------GGGCCGGCG-CGGUCGGU-----------UCG- -5'
33625 5' -66.2 NC_007605.1 + 29395 0.72 0.206025
Target:  5'- aGgGCCggaaccccggaCCCGGCUGCaGCCGGCCAccccccgccggAGCg -3'
miRNA:   3'- gCgCGG-----------GGGCCGGCG-CGGUCGGU-----------UCG- -5'
33625 5' -66.2 NC_007605.1 + 29497 0.72 0.206025
Target:  5'- aGgGCCggaaccccggaCCCGGCUGCaGCCGGCCAccccccgccggAGCg -3'
miRNA:   3'- gCgCGG-----------GGGCCGGCG-CGGUCGGU-----------UCG- -5'
33625 5' -66.2 NC_007605.1 + 29599 0.72 0.206025
Target:  5'- aGgGCCggaaccccggaCCCGGCUGCaGCCGGCCAccccccgccggAGCg -3'
miRNA:   3'- gCgCGG-----------GGGCCGGCG-CGGUCGGU-----------UCG- -5'
33625 5' -66.2 NC_007605.1 + 29701 0.72 0.206025
Target:  5'- aGgGCCggaaccccggaCCCGGCUGCaGCCGGCCAccccccgccggAGCg -3'
miRNA:   3'- gCgCGG-----------GGGCCGGCG-CGGUCGGU-----------UCG- -5'
33625 5' -66.2 NC_007605.1 + 29803 0.72 0.206025
Target:  5'- aGgGCCggaaccccggaCCCGGCUGCaGCCGGCCAccccccgccggAGCg -3'
miRNA:   3'- gCgCGG-----------GGGCCGGCG-CGGUCGGU-----------UCG- -5'
33625 5' -66.2 NC_007605.1 + 30006 0.72 0.206025
Target:  5'- aGgGCCggaaccccggaCCCGGCUGCaGCCGGCCAccccccgccggAGCg -3'
miRNA:   3'- gCgCGG-----------GGGCCGGCG-CGGUCGGU-----------UCG- -5'
33625 5' -66.2 NC_007605.1 + 30108 0.72 0.206025
Target:  5'- aGgGCCggaaccccggaCCCGGCUGCaGCCGGCCAccccccgccggAGCg -3'
miRNA:   3'- gCgCGG-----------GGGCCGGCG-CGGUCGGU-----------UCG- -5'
33625 5' -66.2 NC_007605.1 + 29905 0.72 0.201341
Target:  5'- aGgGCCggaaccccggaCCCGGCUGCaGCCGGCCAcccccgccggAGCg -3'
miRNA:   3'- gCgCGG-----------GGGCCGGCG-CGGUCGGU----------UCG- -5'
33625 5' -66.2 NC_007605.1 + 11011 0.72 0.196749
Target:  5'- uGCGCaaCgCCGGCC-UGCUGGCCGAGCu -3'
miRNA:   3'- gCGCG--GgGGCCGGcGCGGUCGGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 29191 0.72 0.206025
Target:  5'- aGgGCCggaaccccggaCCCGGCUGCaGCCGGCCAccccccgccggAGCg -3'
miRNA:   3'- gCgCGG-----------GGGCCGGCG-CGGUCGGU-----------UCG- -5'
33625 5' -66.2 NC_007605.1 + 29089 0.72 0.206025
Target:  5'- aGgGCCggaaccccggaCCCGGCUGCaGCCGGCCAccccccgccggAGCg -3'
miRNA:   3'- gCgCGG-----------GGGCCGGCG-CGGUCGGU-----------UCG- -5'
33625 5' -66.2 NC_007605.1 + 30210 0.72 0.206025
Target:  5'- aGgGCCggaaccccggaCCCGGCUGCaGCCGGCCAccccccgccggAGCg -3'
miRNA:   3'- gCgCGG-----------GGGCCGGCG-CGGUCGGU-----------UCG- -5'
33625 5' -66.2 NC_007605.1 + 28987 0.72 0.206025
Target:  5'- aGgGCCggaaccccggaCCCGGCUGCaGCCGGCCAccccccgccggAGCg -3'
miRNA:   3'- gCgCGG-----------GGGCCGGCG-CGGUCGGU-----------UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.